{"id":"https://openalex.org/W2142549260","doi":"https://doi.org/10.1093/bioinformatics/btu574","title":"ballaxy: web services for structural bioinformatics","display_name":"ballaxy: web services for structural bioinformatics","publication_year":2014,"publication_date":"2014-09-02","ids":{"openalex":"https://openalex.org/W2142549260","doi":"https://doi.org/10.1093/bioinformatics/btu574","mag":"2142549260","pmid":"https://pubmed.ncbi.nlm.nih.gov/25183489"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu574","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/1/121/49010949/bioinformatics_31_1_121.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/1/121/49010949/bioinformatics_31_1_121.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103563818","display_name":"Anna Katharina Hildebrandt","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Anna Katharina Hildebrandt","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004247736","display_name":"Daniel St\u00f6ckel","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel St\u00f6ckel","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048098004","display_name":"Nina Fischer","orcid":"https://orcid.org/0000-0002-0142-226X"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nina M. Fischer","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112047217","display_name":"Luis de la Garza","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Luis de la Garza","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024793839","display_name":"Jens Kr\u00fcger","orcid":"https://orcid.org/0000-0002-2636-3163"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jens Kr\u00fcger","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054487026","display_name":"Stefan Nickels","orcid":"https://orcid.org/0000-0003-0415-2354"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Nickels","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005703423","display_name":"Marc R\u00f6ttig","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marc R\u00f6ttig","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110641820","display_name":"Charlotta Sch\u00e4rfe","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Charlotta Sch\u00e4rfe","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078737296","display_name":"Marcel Schumann","orcid":"https://orcid.org/0000-0002-9473-0156"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcel Schumann","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082172915","display_name":"Philipp Thiel","orcid":"https://orcid.org/0000-0001-9498-1214"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Thiel","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085594740","display_name":"Hans\u2010Peter Lenhof","orcid":"https://orcid.org/0000-0002-5820-9961"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans-Peter Lenhof","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053621010","display_name":"Oliver Kohlbacher","orcid":"https://orcid.org/0000-0003-1739-4598"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Kohlbacher","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015934308","display_name":"Andreas Hildebrandt","orcid":"https://orcid.org/0000-0003-2180-6516"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Andreas Hildebrandt","raw_affiliation_strings":["1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, 2 Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, University of T\u00fcbingen, 72607 T\u00fcbingen and 3 Chair for Software-Engineering and Bioinformatics, Institute for Informatics, Johannes-Gutenberg-University Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5015934308","https://openalex.org/A5103563818"],"corresponding_institution_ids":["https://openalex.org/I197323543","https://openalex.org/I8087733","https://openalex.org/I91712215"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.1826,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.96592196,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"31","issue":"1","first_page":"121","last_page":"122"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.5715000033378601,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.5715000033378601,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.10589999705553055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.05090000107884407,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6409242749214172},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5561813712120056},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.4271082878112793},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4116172790527344},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4045671820640564},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.325135201215744},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15110483765602112},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.10888773202896118},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.05458700656890869}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6409242749214172},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5561813712120056},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.4271082878112793},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4116172790527344},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4045671820640564},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.325135201215744},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15110483765602112},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.10888773202896118},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.05458700656890869}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu574","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/1/121/49010949/bioinformatics_31_1_121.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25183489","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25183489","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu574","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/1/121/49010949/bioinformatics_31_1_121.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6499999761581421,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2182366","https://openalex.org/W1994223831","https://openalex.org/W2016586584","https://openalex.org/W2061289393","https://openalex.org/W2087001808","https://openalex.org/W2118420027","https://openalex.org/W2136482257","https://openalex.org/W2153606085","https://openalex.org/W2164899027","https://openalex.org/W2216932038","https://openalex.org/W6688309351"],"related_works":["https://openalex.org/W1585782846","https://openalex.org/W2139596909","https://openalex.org/W2081337217","https://openalex.org/W2263165406","https://openalex.org/W2146354553","https://openalex.org/W2509141950","https://openalex.org/W1809074097","https://openalex.org/W178471791","https://openalex.org/W1850348014","https://openalex.org/W1967286098"],"abstract_inverted_index":{"MOTIVATION:":[0],"Web-based":[1],"workflow":[2,24,130],"systems":[3,16],"have":[4],"gained":[5],"considerable":[6],"momentum":[7],"in":[8,28,60,82,98,109,150,214],"sequence-oriented":[9],"bioinformatics.":[10,62,87],"In":[11,46,239],"structural":[12,61,86],"bioinformatics,":[13],"however,":[14],"such":[15],"are":[17,26,245,254],"still":[18,35],"relatively":[19],"rare;":[20],"while":[21],"commercial":[22],"stand-alone":[23],"applications":[25,149],"common":[27],"the":[29,51,64,72,83,110,115,128,139,174,185,189,202,206,215,223,226,236,240,262,265],"pharmaceutical":[30],"industry,":[31],"academic":[32],"researchers":[33],"often":[34],"rely":[36],"on":[37],"command-line":[38],"scripting":[39],"to":[40,141,173,196,201],"glue":[41],"individual":[42],"tools":[43,180,234],"together.":[44],"RESULTS:":[45],"this":[47],"work,":[48],"we":[49,69,135,229],"address":[50],"problem":[52],"of":[53,76,85,91,106,167,179,222,264],"building":[54],"a":[55,156,177],"web-based":[56],"system":[57],"for":[58,71,101,148,159,192,252],"workflows":[59],"For":[63],"underlying":[65],"molecular":[66,92,160,193],"modelling":[67],"engine,":[68],"opted":[70],"BALL":[73,99,117,186,207,218],"framework":[74,187],"because":[75],"its":[77,120],"extensive":[78],"and":[79,95,103,119,122,143,181,188,205,208],"well-tested":[80],"functionality":[81],"field":[84],"The":[88,132],"large":[89],"number":[90],"data":[93],"structures":[94],"algorithms":[96],"implemented":[97],"allows":[100],"elegant":[102],"sophisticated":[104,146],"development":[105],"new":[107],"approaches":[108],"field.":[111],"We":[112],"hence":[113],"connected":[114],"versatile":[116],"library":[118],"visualization":[121],"editing":[123],"front":[124],"end":[125],"BALLView":[126,190,209],"with":[127],"Galaxy":[129,175,197,203,227,237],"framework.":[131],"result,":[133],"which":[134],"call":[136],"ballaxy,":[137],"enables":[138],"user":[140],"simply":[142],"intuitively":[144],"create":[145],"pipelines":[147],"structure-based":[151],"computational":[152],"biology,":[153],"integrated":[154,213],"into":[155,184,225],"standard":[157],"tool":[158],"modelling.":[161,194],"AVAILABILITY":[162],"AND":[163],"IMPLEMENTATION:":[164],"ballaxy":[165,233,253,258],"consists":[166],"three":[168,243],"parts:":[169],"some":[170],"minor":[171],"modifications":[172,224],"system,":[176],"collection":[178],"an":[182],"integration":[183],"application":[191],"Modifications":[195],"will":[198,211,230],"be":[199,212],"submitted":[200],"project,":[204,228],"integrations":[210],"next":[216],"major":[217],"release.":[219],"After":[220],"acceptance":[221],"publish":[231],"all":[232,242],"via":[235],"toolshed.":[238],"meantime,":[241],"components":[244],"available":[246,255],"from":[247],"http://www.ball-project.org/ballaxy.":[248],"Also,":[249],"docker":[250],"images":[251],"at":[256],"https://registry.hub.docker.com/u/anhi/ballaxy/dockerfile/.":[257],"is":[259],"licensed":[260],"under":[261],"terms":[263],"GPL.":[266]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2}],"updated_date":"2026-06-23T13:55:30.953635","created_date":"2025-10-10T00:00:00"}
