{"id":"https://openalex.org/W2951609496","doi":"https://doi.org/10.1093/bioinformatics/btu563","title":"diCal-IBD: demography-aware inference of identity-by-descent tracts in unrelated individuals","display_name":"diCal-IBD: demography-aware inference of identity-by-descent tracts in unrelated individuals","publication_year":2014,"publication_date":"2014-08-21","ids":{"openalex":"https://openalex.org/W2951609496","doi":"https://doi.org/10.1093/bioinformatics/btu563","mag":"2951609496","pmid":"https://pubmed.ncbi.nlm.nih.gov/25147361"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu563","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu563","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4296155","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012886380","display_name":"Paula Tataru","orcid":"https://orcid.org/0000-0001-8493-4764"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK","US"],"is_corresponding":true,"raw_author_name":"Paula Tataru","raw_affiliation_strings":["1 Bioinformatics Research Centre, Department of Computer Science, Aarhus University, 8000 Aarhus C, Denmark, 2Biophysics Graduate Group, 3Computer Science Division, 4Department of Statistics and 5Department of Integrative Biology, University of California, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Research Centre, Department of Computer Science, Aarhus University, 8000 Aarhus C, Denmark, 2Biophysics Graduate Group, 3Computer Science Division, 4Department of Statistics and 5Department of Integrative Biology, University of California, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486","https://openalex.org/I204337017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047717215","display_name":"Jasmine A. Nirody","orcid":"https://orcid.org/0000-0002-0461-1031"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Jasmine A. Nirody","raw_affiliation_strings":["1 Bioinformatics Research Centre, Department of Computer Science, Aarhus University, 8000 Aarhus C, Denmark, 2Biophysics Graduate Group, 3Computer Science Division, 4Department of Statistics and 5Department of Integrative Biology, University of California, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Research Centre, Department of Computer Science, Aarhus University, 8000 Aarhus C, Denmark, 2Biophysics Graduate Group, 3Computer Science Division, 4Department of Statistics and 5Department of Integrative Biology, University of California, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486","https://openalex.org/I204337017"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050837693","display_name":"Yun S. Song","orcid":"https://orcid.org/0000-0002-0734-9868"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Yun S. Song","raw_affiliation_strings":["1 Bioinformatics Research Centre, Department of Computer Science, Aarhus University, 8000 Aarhus C, Denmark, 2Biophysics Graduate Group, 3Computer Science Division, 4Department of Statistics and 5Department of Integrative Biology, University of California, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Research Centre, Department of Computer Science, Aarhus University, 8000 Aarhus C, Denmark, 2Biophysics Graduate Group, 3Computer Science Division, 4Department of Statistics and 5Department of Integrative Biology, University of California, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486","https://openalex.org/I204337017"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012886380"],"corresponding_institution_ids":["https://openalex.org/I204337017","https://openalex.org/I95457486"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.1022,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.88255972,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"30","issue":"23","first_page":"3430","last_page":"3431"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9513000249862671,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9513000249862671,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9138000011444092,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7944476008415222},{"id":"https://openalex.org/keywords/identity-by-descent","display_name":"Identity by descent","score":0.7020977735519409},{"id":"https://openalex.org/keywords/identity","display_name":"Identity (music)","score":0.5828138589859009},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.55186527967453},{"id":"https://openalex.org/keywords/genealogy","display_name":"Genealogy","score":0.3969983458518982},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3901776373386383},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.34429314732551575},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2534293532371521},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2397075593471527},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.1988672912120819},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18781980872154236},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16793546080589294},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.13897418975830078}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7944476008415222},{"id":"https://openalex.org/C178221405","wikidata":"https://www.wikidata.org/wiki/Q5988338","display_name":"Identity by descent","level":5,"score":0.7020977735519409},{"id":"https://openalex.org/C2778355321","wikidata":"https://www.wikidata.org/wiki/Q17079427","display_name":"Identity (music)","level":2,"score":0.5828138589859009},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.55186527967453},{"id":"https://openalex.org/C53553401","wikidata":"https://www.wikidata.org/wiki/Q47307","display_name":"Genealogy","level":1,"score":0.3969983458518982},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3901776373386383},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.34429314732551575},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2534293532371521},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2397075593471527},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.1988672912120819},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18781980872154236},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16793546080589294},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.13897418975830078},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003710","descriptor_name":"Demography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003710","descriptor_name":"Demography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003710","descriptor_name":"Demography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btu563","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu563","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25147361","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25147361","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt1gb5b9x2","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1gb5b9x2","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 30, iss 23","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4296155","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4296155","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/ddc29245-639a-4664-87ef-725819aede8f","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/content/30/23/3430","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Tataru, P, Nirody, J A & Song, Y S 2014, 'diCal-IBD: demography-aware inference of identity-by-descent tracts in unrelated individuals', Bioinformatics, vol. 30, no. 23, pp. 3430-3431. https://doi.org/10.1093/bioinformatics/btu563","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4296155","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4296155","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.699999988079071}],"awards":[{"id":"https://openalex.org/G3550693842","display_name":null,"funder_award_id":"R01-GM094402","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8164471825","display_name":null,"funder_award_id":"IGERT","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1973950074","https://openalex.org/W1980792369","https://openalex.org/W1987754412","https://openalex.org/W1996030209","https://openalex.org/W1996723946","https://openalex.org/W2020302614","https://openalex.org/W2091705028","https://openalex.org/W2098066250","https://openalex.org/W2107746932","https://openalex.org/W2131306424","https://openalex.org/W2134599124","https://openalex.org/W2151880726","https://openalex.org/W2168933019"],"related_works":["https://openalex.org/W2055243143","https://openalex.org/W1602558772","https://openalex.org/W2963711113","https://openalex.org/W1981653437","https://openalex.org/W2129999449","https://openalex.org/W4291984444","https://openalex.org/W2052729430","https://openalex.org/W1550328219","https://openalex.org/W4292475718","https://openalex.org/W3133708759"],"abstract_inverted_index":{"http://sourceforge.net/projects/dical-ibd.":[0]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
