{"id":"https://openalex.org/W2127691629","doi":"https://doi.org/10.1093/bioinformatics/btu560","title":"ExpTreeDB: Web-based query and visualization of manually annotated gene expression profiling experiments of human and mouse from GEO","display_name":"ExpTreeDB: Web-based query and visualization of manually annotated gene expression profiling experiments of human and mouse from GEO","publication_year":2014,"publication_date":"2014-08-24","ids":{"openalex":"https://openalex.org/W2127691629","doi":"https://doi.org/10.1093/bioinformatics/btu560","mag":"2127691629","pmid":"https://pubmed.ncbi.nlm.nih.gov/25152233"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu560","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu560","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/23/3379/48931454/bioinformatics_30_23_3379.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/23/3379/48931454/bioinformatics_30_23_3379.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090433321","display_name":"Ming Ni","orcid":"https://orcid.org/0000-0001-9465-2787"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Ni","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087061899","display_name":"Fuqiang Ye","orcid":"https://orcid.org/0000-0002-6069-5524"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fuqiang Ye","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101879718","display_name":"Juanjuan Zhu","orcid":"https://orcid.org/0000-0002-8753-6953"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juanjuan Zhu","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019445441","display_name":"Zongwei Li","orcid":"https://orcid.org/0009-0004-5061-8690"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zongwei Li","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101415940","display_name":"Shuai Yang","orcid":"https://orcid.org/0000-0002-4323-5921"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuai Yang","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087865536","display_name":"Bite Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bite Yang","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100611075","display_name":"Lu Han","orcid":"https://orcid.org/0000-0002-7689-1132"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Han","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102857141","display_name":"Yongge Wu","orcid":"https://orcid.org/0000-0002-3536-0706"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongge Wu","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080961250","display_name":"Ying Chen","orcid":"https://orcid.org/0000-0002-5612-5027"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Chen","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100325907","display_name":"Fei Li","orcid":"https://orcid.org/0000-0003-4895-7330"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Li","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036267807","display_name":"Shengqi Wang","orcid":"https://orcid.org/0000-0002-6368-8450"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shengqi Wang","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045958734","display_name":"Xiaochen Bo","orcid":"https://orcid.org/0000-0003-1911-7922"},"institutions":[{"id":"https://openalex.org/I160354188","display_name":"Henan University of Traditional Chinese Medicine","ror":"https://ror.org/01tsmvz08","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354188"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaochen Bo","raw_affiliation_strings":["1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Beijing Institute of Radiation Medicine, Beijing 100850, 2College of Life Sciences, Jilin University, Changchun 130012 and 3Henan University of Traditional Chinese Medicine, Zhengzhou 450008, China","institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5036267807","https://openalex.org/A5045958734","https://openalex.org/A5100325907"],"corresponding_institution_ids":["https://openalex.org/I160354188","https://openalex.org/I194450716"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5692,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.67904861,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"30","issue":"23","first_page":"3379","last_page":"3386"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8809999823570251,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8809999823570251,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.0215000007301569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.019300000742077827,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7918503284454346},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7423863410949707},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.6425238251686096},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5061749815940857},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5026016235351562},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.4953218996524811},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.47089746594429016},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.45366719365119934},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.438687264919281},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.41702592372894287},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3628263473510742},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.35630708932876587},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3431744873523712},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1812559962272644},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.14784175157546997},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14173856377601624},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11961996555328369}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7918503284454346},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7423863410949707},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.6425238251686096},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5061749815940857},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5026016235351562},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.4953218996524811},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.47089746594429016},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.45366719365119934},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.438687264919281},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.41702592372894287},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3628263473510742},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.35630708932876587},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3431744873523712},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1812559962272644},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14784175157546997},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14173856377601624},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11961996555328369},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015687","descriptor_name":"Cell Hypoxia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015687","descriptor_name":"Cell Hypoxia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015687","descriptor_name":"Cell Hypoxia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu560","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu560","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/23/3379/48931454/bioinformatics_30_23_3379.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25152233","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25152233","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu560","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu560","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/23/3379/48931454/bioinformatics_30_23_3379.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G5102009689","display_name":null,"funder_award_id":"2012ZX09301-003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5259653293","display_name":"\u57fa\u4e8e\u7f51\u7edc\u6bd4\u8f83\u7684\u65b9\u5242\u94f6\u7fd8\u6563\u6297\u6d41\u611f\u4f5c\u7528\u673a\u5236\u7814\u7a76","funder_award_id":"81230089","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5634185107","display_name":null,"funder_award_id":"2014DFB30020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6620684634","display_name":null,"funder_award_id":"81273488","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127691629.pdf","grobid_xml":"https://content.openalex.org/works/W2127691629.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1600537614","https://openalex.org/W1902994240","https://openalex.org/W1996830477","https://openalex.org/W2000125049","https://openalex.org/W2001401534","https://openalex.org/W2006760151","https://openalex.org/W2009025367","https://openalex.org/W2010457001","https://openalex.org/W2011076742","https://openalex.org/W2014620140","https://openalex.org/W2017613521","https://openalex.org/W2020350008","https://openalex.org/W2020541351","https://openalex.org/W2021456045","https://openalex.org/W2029980980","https://openalex.org/W2042221522","https://openalex.org/W2044136618","https://openalex.org/W2045456147","https://openalex.org/W2058535519","https://openalex.org/W2066889631","https://openalex.org/W2076583311","https://openalex.org/W2094791588","https://openalex.org/W2104357712","https://openalex.org/W2111065008","https://openalex.org/W2121604817","https://openalex.org/W2124496728","https://openalex.org/W2124967403","https://openalex.org/W2128054164","https://openalex.org/W2129815183","https://openalex.org/W2130410032","https://openalex.org/W2132304432","https://openalex.org/W2134582937","https://openalex.org/W2137632714","https://openalex.org/W2151029652","https://openalex.org/W2155402337","https://openalex.org/W2160306591","https://openalex.org/W2163500926","https://openalex.org/W2165232124","https://openalex.org/W2172277997"],"related_works":["https://openalex.org/W2135207763","https://openalex.org/W2136499634","https://openalex.org/W2026517560","https://openalex.org/W2181708461","https://openalex.org/W2183420549","https://openalex.org/W2032717553","https://openalex.org/W2083737836","https://openalex.org/W1971278063","https://openalex.org/W2154097321","https://openalex.org/W1971994387"],"abstract_inverted_index":{"MOTIVATION:":[0],"Numerous":[1],"public":[2],"microarray":[3,59],"datasets":[4,26],"are":[5,113],"valuable":[6],"resources":[7],"for":[8,53,124],"the":[9],"scientific":[10],"communities.":[11],"Several":[12],"online":[13],"tools":[14],"have":[15],"made":[16],"great":[17],"steps":[18],"to":[19,43,78,90],"use":[20],"these":[21],"data":[22],"by":[23,115],"querying":[24],"related":[25,125],"with":[27,65,71],"users'":[28],"own":[29],"gene":[30,66],"signatures":[31,67],"or":[32,68],"expression":[33],"profiles.":[34,69],"However,":[35],"dataset":[36,79],"annotation":[37,88],"and":[38,57,81,92,127,155],"result":[39,82],"exhibition":[40],"still":[41],"need":[42],"be":[44],"improved.":[45],"RESULTS:":[46],"ExpTreeDB":[47,74],"is":[48,103,141,148],"a":[49,86,98],"database":[50,140],"that":[51],"allows":[52],"queries":[54],"on":[55,131],"human":[56],"mouse":[58],"experiments":[60,126],"from":[61],"Gene":[62],"Expression":[63],"Omnibus":[64],"Compared":[70],"similar":[72],"applications,":[73],"pays":[75],"more":[76],"attention":[77],"annotations":[80],"visualization.":[83],"We":[84],"introduced":[85],"multiple-level":[87],"system":[89],"depict":[91],"organize":[93],"original":[94],"experiments.":[95],"For":[96],"example,":[97],"tamoxifen-treated":[99],"cell":[100],"line":[101],"experiment":[102],"hierarchically":[104],"annotated":[105],"as":[106],"'agent\u2192drug\u2192estrogen":[107],"receptor":[108],"antagonist\u2192tamoxifen'.":[109],"Consequently,":[110],"retrieved":[111],"results":[112],"exhibited":[114],"an":[116,122],"interactive":[117],"tree-structured":[118],"graphics,":[119],"which":[120],"provide":[121],"overview":[123],"might":[128],"enlighten":[129],"users":[130],"key":[132],"items":[133],"of":[134],"interest.":[135],"AVAILABILITY":[136],"AND":[137],"IMPLEMENTATION:":[138],"The":[139],"freely":[142],"available":[143],"at":[144],"http://biotech.bmi.ac.cn/ExpTreeDB.":[145],"Web":[146],"site":[147],"implemented":[149],"in":[150],"Perl,":[151],"PHP,":[152],"R,":[153],"MySQL":[154],"Apache.":[156]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
