{"id":"https://openalex.org/W2128013681","doi":"https://doi.org/10.1093/bioinformatics/btu554","title":"ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments","display_name":"ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments","publication_year":2014,"publication_date":"2014-08-22","ids":{"openalex":"https://openalex.org/W2128013681","doi":"https://doi.org/10.1093/bioinformatics/btu554","mag":"2128013681","pmid":"https://pubmed.ncbi.nlm.nih.gov/25150250"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/23/3440/17146894/btu554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/23/3440/17146894/btu554.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055984147","display_name":"Imtiaz Khan","orcid":"https://orcid.org/0000-0001-7624-1319"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Imtiaz A. Khan","raw_affiliation_strings":["1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK","institution_ids":["https://openalex.org/I79510175","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029481749","display_name":"Adam Fraser","orcid":null},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Adam Fraser","raw_affiliation_strings":["1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK","institution_ids":["https://openalex.org/I79510175","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059045145","display_name":"Mark\u2010Anthony Bray","orcid":"https://orcid.org/0000-0002-9748-3592"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Mark-Anthony Bray","raw_affiliation_strings":["1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK","institution_ids":["https://openalex.org/I79510175","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101837563","display_name":"Paul J. Smith","orcid":"https://orcid.org/0000-0002-1012-1530"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Paul J. Smith","raw_affiliation_strings":["1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK","institution_ids":["https://openalex.org/I79510175","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103587689","display_name":"Nick S. White","orcid":null},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Nick S. White","raw_affiliation_strings":["1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK","institution_ids":["https://openalex.org/I79510175","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052473265","display_name":"Anne E. Carpenter","orcid":"https://orcid.org/0000-0003-1555-8261"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Anne E. Carpenter","raw_affiliation_strings":["1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK","institution_ids":["https://openalex.org/I79510175","https://openalex.org/I107606265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024864543","display_name":"Rachel J. Errington","orcid":null},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Rachel J. Errington","raw_affiliation_strings":["1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Medicine, Cardiff University, Cardiff, UK, 2Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA and 3School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK","institution_ids":["https://openalex.org/I79510175","https://openalex.org/I107606265"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5055984147"],"corresponding_institution_ids":["https://openalex.org/I107606265","https://openalex.org/I79510175"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7423,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.90440781,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"30","issue":"23","first_page":"3440","last_page":"3442"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/emulation","display_name":"Emulation","score":0.7810153365135193},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.772638201713562},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7366687059402466},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7316529154777527},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6568422913551331},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6373967528343201},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.6032294631004333},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.557891845703125},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4286864697933197},{"id":"https://openalex.org/keywords/software-documentation","display_name":"Software documentation","score":0.41645917296409607},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.41233280301094055},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.41017013788223267},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4028623402118683},{"id":"https://openalex.org/keywords/software-system","display_name":"Software system","score":0.26577383279800415},{"id":"https://openalex.org/keywords/software-construction","display_name":"Software construction","score":0.23960277438163757},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17552784085273743},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09442734718322754}],"concepts":[{"id":"https://openalex.org/C149810388","wikidata":"https://www.wikidata.org/wiki/Q5374873","display_name":"Emulation","level":2,"score":0.7810153365135193},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.772638201713562},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7366687059402466},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7316529154777527},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6568422913551331},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6373967528343201},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.6032294631004333},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.557891845703125},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4286864697933197},{"id":"https://openalex.org/C81587897","wikidata":"https://www.wikidata.org/wiki/Q181702","display_name":"Software documentation","level":5,"score":0.41645917296409607},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.41233280301094055},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.41017013788223267},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4028623402118683},{"id":"https://openalex.org/C149091818","wikidata":"https://www.wikidata.org/wiki/Q2429814","display_name":"Software system","level":3,"score":0.26577383279800415},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.23960277438163757},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17552784085273743},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09442734718322754},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053758","descriptor_name":"Nanoparticles","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D053758","descriptor_name":"Nanoparticles","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D053758","descriptor_name":"Nanoparticles","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btu554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/23/3440/17146894/btu554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25150250","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25150250","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:https://orca.cardiff.ac.uk:79041","is_oa":false,"landing_page_url":"https://orca.cardiff.ac.uk/id/eprint/79041/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401195","display_name":"ORCA Online Research @Cardiff (Cardiff University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79510175","host_organization_name":"Cardiff University","host_organization_lineage":["https://openalex.org/I79510175"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4296150","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4296150","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.cardiffmet.ac.uk:10369/9525","is_oa":false,"landing_page_url":"http://hdl.handle.net/10369/9525","pdf_url":null,"source":{"id":"https://openalex.org/S4306401326","display_name":"Cardiff Metropolitan Research Repository (Cardiff Metropolitan University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I8408910","host_organization_name":"Cardiff Metropolitan University","host_organization_lineage":["https://openalex.org/I8408910"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/23/3440/17146894/btu554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2459441134","display_name":null,"funder_award_id":"EP/H045848/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2689612763","display_name":null,"funder_award_id":"Marie","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4681381370","display_name":null,"funder_award_id":"Marie Curie","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7935875100","display_name":null,"funder_award_id":"EP/G037841/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8428858902","display_name":"Enabling the interoperability of cytometric data \u2013 a novel bioinformatics approach for revealing systems level understanding of cell cycle dynamics","funder_award_id":"254046","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G992523048","display_name":null,"funder_award_id":"Marie Curie International Outgoing Fellowship","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320338368","display_name":"FP7 People: Marie-Curie Actions","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128013681.pdf","grobid_xml":"https://content.openalex.org/works/W2128013681.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1987777080","https://openalex.org/W2001811698","https://openalex.org/W2003423696","https://openalex.org/W2003426760","https://openalex.org/W2013434113","https://openalex.org/W2040405436","https://openalex.org/W2130430745","https://openalex.org/W3142609019","https://openalex.org/W4237866497","https://openalex.org/W4244387630"],"related_works":["https://openalex.org/W2098339479","https://openalex.org/W3214341251","https://openalex.org/W4226330077","https://openalex.org/W2113128227","https://openalex.org/W2904462035","https://openalex.org/W2061990085","https://openalex.org/W4200403781","https://openalex.org/W2567010819","https://openalex.org/W4311938462","https://openalex.org/W3217131165"],"abstract_inverted_index":{"ProtocolNavigator":[0],"was":[1],"implemented":[2],"in":[3],"Python":[4],"2.7,":[5],"using":[6],"the":[7,12,27],"wx":[8],"module":[9],"to":[10],"build":[11],"graphical":[13],"user":[14],"interface.":[15],"It":[16],"is":[17],"a":[18],"platform-independent":[19],"software":[20],"and":[21],"freely":[22],"available":[23],"from":[24],"http://protocolnavigator.org/index.html":[25],"under":[26],"GPL":[28],"v2":[29],"license.":[30]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
