{"id":"https://openalex.org/W2008853493","doi":"https://doi.org/10.1093/bioinformatics/btu521","title":"APPEX: analysis platform for the identification of prognostic gene expression signatures in cancer","display_name":"APPEX: analysis platform for the identification of prognostic gene expression signatures in cancer","publication_year":2014,"publication_date":"2014-08-04","ids":{"openalex":"https://openalex.org/W2008853493","doi":"https://doi.org/10.1093/bioinformatics/btu521","mag":"2008853493","pmid":"https://pubmed.ncbi.nlm.nih.gov/25091586"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu521","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu521","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3284/48931266/bioinformatics_30_22_3284.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3284/48931266/bioinformatics_30_22_3284.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087350067","display_name":"Seon\u2010Kyu Kim","orcid":"https://orcid.org/0000-0002-4176-5187"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seon-Kyu Kim","raw_affiliation_strings":["1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea","institution_ids":["https://openalex.org/I163753206","https://openalex.org/I73616290","https://openalex.org/I88761825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011126782","display_name":"Jong Hwan Kim","orcid":"https://orcid.org/0000-0001-6201-9602"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Seon-Kyu Kim","raw_affiliation_strings":["1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea","institution_ids":["https://openalex.org/I163753206","https://openalex.org/I73616290","https://openalex.org/I88761825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011126782","display_name":"Jong Hwan Kim","orcid":"https://orcid.org/0000-0001-6201-9602"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jong Hwan Kim","raw_affiliation_strings":["1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea","institution_ids":["https://openalex.org/I163753206","https://openalex.org/I73616290","https://openalex.org/I88761825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039520888","display_name":"Seok Joong Yun","orcid":"https://orcid.org/0000-0001-7737-4746"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seok-Joong Yun","raw_affiliation_strings":["1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea","institution_ids":["https://openalex.org/I163753206","https://openalex.org/I73616290","https://openalex.org/I88761825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028262111","display_name":"Wun\u2010Jae Kim","orcid":"https://orcid.org/0000-0002-8060-8926"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Wun-Jae Kim","raw_affiliation_strings":["1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea","institution_ids":["https://openalex.org/I163753206","https://openalex.org/I73616290","https://openalex.org/I88761825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100621846","display_name":"Seon\u2010Young Kim","orcid":"https://orcid.org/0000-0002-1030-7730"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seon-Young Kim","raw_affiliation_strings":["1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea","institution_ids":["https://openalex.org/I163753206","https://openalex.org/I73616290","https://openalex.org/I88761825"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100621846","display_name":"Seon\u2010Young Kim","orcid":"https://orcid.org/0000-0002-1030-7730"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Seon-Young Kim","raw_affiliation_strings":["1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics Research Center, 2 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 3 Department of Functional Genomics, University of Science and Technology, Daejeon 305-806, Korea and 4 Department of Urology, Chungbuk National University College of Medicine, Cheongju 360-100, Korea","institution_ids":["https://openalex.org/I163753206","https://openalex.org/I73616290","https://openalex.org/I88761825"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011126782","https://openalex.org/A5100621846"],"corresponding_institution_ids":["https://openalex.org/I163753206","https://openalex.org/I73616290","https://openalex.org/I88761825"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8875,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.75144181,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"30","issue":"22","first_page":"3284","last_page":"3286"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.4481000006198883,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.4481000006198883,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.21170000731945038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1712000072002411,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.8094966411590576},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.597375750541687},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.576714038848877},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5634089112281799},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.49463149905204773},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4407764673233032},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41275206208229065},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3983500003814697},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34696125984191895},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07659795880317688}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.8094966411590576},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.597375750541687},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.576714038848877},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5634089112281799},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.49463149905204773},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4407764673233032},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41275206208229065},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3983500003814697},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34696125984191895},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07659795880317688},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001749","descriptor_name":"Urinary Bladder Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001749","descriptor_name":"Urinary Bladder Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001749","descriptor_name":"Urinary Bladder Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001749","descriptor_name":"Urinary Bladder Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D001749","descriptor_name":"Urinary Bladder Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D001749","descriptor_name":"Urinary Bladder Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009364","descriptor_name":"Neoplasm Recurrence, Local","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009364","descriptor_name":"Neoplasm Recurrence, Local","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009364","descriptor_name":"Neoplasm Recurrence, Local","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu521","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu521","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3284/48931266/bioinformatics_30_22_3284.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25091586","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25091586","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:http://repository.kribb.re.kr:8080/:201005/12255","is_oa":false,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btu521","pdf_url":null,"source":{"id":"https://openalex.org/S4406922719","display_name":"KRIBB Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"/dspace/upload/original/12669.pdf","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu521","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu521","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3284/48931266/bioinformatics_30_22_3284.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2008853493.pdf"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1580788756","https://openalex.org/W1986724703","https://openalex.org/W2018116321","https://openalex.org/W2030915385","https://openalex.org/W2037915750","https://openalex.org/W2069168497","https://openalex.org/W2103196126","https://openalex.org/W2105882193","https://openalex.org/W2114299743","https://openalex.org/W2114843025","https://openalex.org/W2123664981","https://openalex.org/W3147894994"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W2898732673","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W2803323662","https://openalex.org/W3032874291","https://openalex.org/W2005057264","https://openalex.org/W2363156284","https://openalex.org/W2415025170"],"abstract_inverted_index":{"SUMMARY:":[0],"Because":[1],"cancer":[2,26,50,104],"has":[3],"heterogeneous":[4],"clinical":[5],"behaviors":[6],"due":[7],"to":[8,88],"the":[9,18,34,112],"progressive":[10],"accumulation":[11],"of":[12,20,55,78,93,111],"multiple":[13],"genetic":[14],"and":[15,61,74,86,102],"epigenetic":[16],"alterations,":[17],"identification":[19],"robust":[21],"molecular":[22,46],"signatures":[23,47],"for":[24,43,58],"predicting":[25],"outcome":[27],"is":[28,119],"profoundly":[29],"important.":[30],"Here,":[31],"we":[32],"introduce":[33],"APPEX":[35,118],"Web-based":[36],"analysis":[37,60,65],"platform":[38],"as":[39],"a":[40],"versatile":[41],"tool":[42],"identifying":[44],"prognostic":[45,94],"that":[48],"predict":[49],"diversity.":[51],"We":[52],"incorporated":[53],"most":[54],"statistical":[56],"methods":[57],"survival":[59,64],"implemented":[62],"seven":[63,113],"workflows,":[66],"including":[67,99],"CoxSingle,":[68],"CoxMulti,":[69],"IntransSingle,":[70],"IntransMulti,":[71],"SuperPC,":[72],"TimeRoc":[73],"multivariate.":[75],"A":[76],"total":[77],"236":[79],"publicly":[80],"available":[81,121,131],"datasets":[82],"were":[83,106],"collected,":[84],"processed":[85],"stored":[87],"support":[89],"easy":[90],"independent":[91],"validation":[92],"signatures.":[95],"Two":[96],"case":[97],"studies":[98],"disease":[100],"recurrence":[101],"bladder":[103],"progression":[105],"described":[107],"using":[108],"different":[109],"combinations":[110],"workflows.":[114],"AVAILABILITY":[115],"AND":[116],"IMPLEMENTATION:":[117],"freely":[120],"at":[122,132],"http://www.appex.kr.":[123],"CONTACT:":[124],"kimsy@kribb.re.kr":[125],"SUPPLEMENTARY":[126],"INFORMATION:":[127],"Supplementary":[128],"data":[129],"are":[130],"Bioinformatics":[133],"online.":[134]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
