{"id":"https://openalex.org/W2113340340","doi":"https://doi.org/10.1093/bioinformatics/btu516","title":"Amplicon identification using SparsE representation of multiplex PYROsequencing signal (AdvISER-M-PYRO): application to bacterial resistance genotyping","display_name":"Amplicon identification using SparsE representation of multiplex PYROsequencing signal (AdvISER-M-PYRO): application to bacterial resistance genotyping","publication_year":2014,"publication_date":"2014-08-30","ids":{"openalex":"https://openalex.org/W2113340340","doi":"https://doi.org/10.1093/bioinformatics/btu516","mag":"2113340340","pmid":"https://pubmed.ncbi.nlm.nih.gov/25173420"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu516","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu516","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/24/3590/48931390/bioinformatics_30_24_3590.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/24/3590/48931390/bioinformatics_30_24_3590.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089678521","display_name":"J\u00e9r\u00f4me Ambroise","orcid":"https://orcid.org/0000-0002-1218-6143"},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]},{"id":"https://openalex.org/I4210114693","display_name":"Military Medical Academy","ror":"https://ror.org/032y5zj91","country_code":"BG","type":"healthcare","lineage":["https://openalex.org/I4210114693"]}],"countries":["BE","BG"],"is_corresponding":true,"raw_author_name":"J\u00e9r\u00f4me Ambroise","raw_affiliation_strings":["1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium","institution_ids":["https://openalex.org/I95674353","https://openalex.org/I4210114693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011571165","display_name":"Yann Deccache","orcid":null},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]},{"id":"https://openalex.org/I4210114693","display_name":"Military Medical Academy","ror":"https://ror.org/032y5zj91","country_code":"BG","type":"healthcare","lineage":["https://openalex.org/I4210114693"]}],"countries":["BE","BG"],"is_corresponding":false,"raw_author_name":"Yann Deccache","raw_affiliation_strings":["1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium","institution_ids":["https://openalex.org/I95674353","https://openalex.org/I4210114693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047855191","display_name":"L\u00e9onid M. Irenge","orcid":"https://orcid.org/0000-0001-7924-7046"},"institutions":[{"id":"https://openalex.org/I4210114693","display_name":"Military Medical Academy","ror":"https://ror.org/032y5zj91","country_code":"BG","type":"healthcare","lineage":["https://openalex.org/I4210114693"]},{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE","BG"],"is_corresponding":false,"raw_author_name":"Leonid Irenge","raw_affiliation_strings":["1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium","institution_ids":["https://openalex.org/I95674353","https://openalex.org/I4210114693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072725088","display_name":"Encho Savov","orcid":null},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]},{"id":"https://openalex.org/I4210114693","display_name":"Military Medical Academy","ror":"https://ror.org/032y5zj91","country_code":"BG","type":"healthcare","lineage":["https://openalex.org/I4210114693"]}],"countries":["BE","BG"],"is_corresponding":false,"raw_author_name":"Encho Savov","raw_affiliation_strings":["1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium","institution_ids":["https://openalex.org/I95674353","https://openalex.org/I4210114693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050657323","display_name":"Annie Robert","orcid":"https://orcid.org/0000-0003-3720-7331"},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]},{"id":"https://openalex.org/I4210114693","display_name":"Military Medical Academy","ror":"https://ror.org/032y5zj91","country_code":"BG","type":"healthcare","lineage":["https://openalex.org/I4210114693"]}],"countries":["BE","BG"],"is_corresponding":false,"raw_author_name":"Annie Robert","raw_affiliation_strings":["1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium","institution_ids":["https://openalex.org/I95674353","https://openalex.org/I4210114693"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077430855","display_name":"Jean\u2010Luc Gala","orcid":"https://orcid.org/0000-0002-7749-573X"},"institutions":[{"id":"https://openalex.org/I4210114693","display_name":"Military Medical Academy","ror":"https://ror.org/032y5zj91","country_code":"BG","type":"healthcare","lineage":["https://openalex.org/I4210114693"]},{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE","BG"],"is_corresponding":false,"raw_author_name":"Jean-Luc Gala","raw_affiliation_strings":["1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Center for Applied Molecular Technologies (CTMA), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, 2 Defence Laboratories Department, Belgian Armed Forces, 1800 Vilvoorde, Belgium, 3 Department of Epidemiology and Hygiene, Military Medical Academy of Sofia, 1000 Sofia, Bulgaria and 4 Epidemiology and Biostatistics Department (EPID), Institut de Recherche Exp\u00e9rimentale et Clinique (IREC), Universit\u00e9 catholique de Louvain, Clos Chapelle-aux-Champs 30, 1200 Bruxelles, Belgium","institution_ids":["https://openalex.org/I95674353","https://openalex.org/I4210114693"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5089678521"],"corresponding_institution_ids":["https://openalex.org/I4210114693","https://openalex.org/I95674353"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4183,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.63719313,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"30","issue":"24","first_page":"3590","last_page":"3597"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9556999802589417,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.911300003528595,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pyrosequencing","display_name":"Pyrosequencing","score":0.9743965864181519},{"id":"https://openalex.org/keywords/multiplex","display_name":"Multiplex","score":0.7122653722763062},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.6826708316802979},{"id":"https://openalex.org/keywords/amplicon","display_name":"Amplicon","score":0.5969020128250122},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.578188419342041},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5292234420776367},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4952482283115387},{"id":"https://openalex.org/keywords/primer","display_name":"Primer (cosmetics)","score":0.4547899663448334},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.453710675239563},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.44410890340805054},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.4235060214996338},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.41159558296203613},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21331748366355896},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.1955072283744812},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.08133533596992493}],"concepts":[{"id":"https://openalex.org/C125009961","wikidata":"https://www.wikidata.org/wiki/Q2342248","display_name":"Pyrosequencing","level":3,"score":0.9743965864181519},{"id":"https://openalex.org/C2781188995","wikidata":"https://www.wikidata.org/wiki/Q6934982","display_name":"Multiplex","level":2,"score":0.7122653722763062},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.6826708316802979},{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.5969020128250122},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.578188419342041},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5292234420776367},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4952482283115387},{"id":"https://openalex.org/C2777563447","wikidata":"https://www.wikidata.org/wiki/Q7243397","display_name":"Primer (cosmetics)","level":2,"score":0.4547899663448334},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.453710675239563},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.44410890340805054},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.4235060214996338},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.41159558296203613},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21331748366355896},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.1955072283744812},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.08133533596992493},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu516","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu516","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/24/3590/48931390/bioinformatics_30_24_3590.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25173420","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25173420","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dial.uclouvain.be:boreal:150302","is_oa":false,"landing_page_url":"http://hdl.handle.net/2078.1/150302","pdf_url":null,"source":{"id":"https://openalex.org/S4306401974","display_name":"DIAL (Catholic University of Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, Vol. 30, no. 24, p. 3590-3597 (2014)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu516","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu516","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/24/3590/48931390/bioinformatics_30_24_3590.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113340340.pdf","grobid_xml":"https://content.openalex.org/works/W2113340340.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1690322145","https://openalex.org/W1997143239","https://openalex.org/W2002374817","https://openalex.org/W2016541951","https://openalex.org/W2019251495","https://openalex.org/W2044818287","https://openalex.org/W2067338363","https://openalex.org/W2073399920","https://openalex.org/W2096035655","https://openalex.org/W2099747689","https://openalex.org/W2111356565","https://openalex.org/W2154729337","https://openalex.org/W4240854514","https://openalex.org/W4256251556","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2061211738","https://openalex.org/W120656439","https://openalex.org/W2476015283","https://openalex.org/W4254928341","https://openalex.org/W2614549450","https://openalex.org/W2496005319","https://openalex.org/W2056857250","https://openalex.org/W2058252696","https://openalex.org/W2019251495","https://openalex.org/W2462212663"],"abstract_inverted_index":{"In":[0],"this":[1],"proof-of-concept":[2],"study,":[3],"quintuplex":[4],"pyrosequencing":[5],"was":[6,43,49],"applied":[7],"on":[8],"eight":[9],"bacterial":[10],"DNA":[11],"and":[12],"targeted":[13],"genetic":[14,26],"alterations":[15],"underlying":[16],"resistance":[17],"to":[18],"\u03b2-lactam":[19],"antibiotics.":[20],"Using":[21],"SENATOR-driven":[22],"dispensation":[23],"order,":[24],"all":[25],"variants":[27],"(31":[28],"of":[29],"31;":[30],"100%)":[31],"were":[32],"correctly":[33],"identified":[34],"with":[35,51],"AdvISER-M-PYRO.":[36],"Among":[37],"nine":[38],"expected":[39],"negative":[40],"results,":[41],"there":[42],"only":[44],"one":[45],"false":[46],"positive":[47],"that":[48],"tagged":[50],"an":[52],"'unsafe'":[53],"label.":[54]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}