{"id":"https://openalex.org/W2146426769","doi":"https://doi.org/10.1093/bioinformatics/btu510","title":"Kotai Antibody Builder: automated high-resolution structural modeling of antibodies","display_name":"Kotai Antibody Builder: automated high-resolution structural modeling of antibodies","publication_year":2014,"publication_date":"2014-07-26","ids":{"openalex":"https://openalex.org/W2146426769","doi":"https://doi.org/10.1093/bioinformatics/btu510","mag":"2146426769","pmid":"https://pubmed.ncbi.nlm.nih.gov/25064566"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu510","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu510","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3279/48931083/bioinformatics_30_22_3279.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3279/48931083/bioinformatics_30_22_3279.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048857921","display_name":"Kazuo Yamashita","orcid":"https://orcid.org/0000-0002-0085-2057"},"institutions":[{"id":"https://openalex.org/I142395110","display_name":"Astellas Pharma (Japan)","ror":"https://ror.org/01cjash87","country_code":"JP","type":"company","lineage":["https://openalex.org/I142395110"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuo Yamashita","raw_affiliation_strings":["1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan","institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105206851","display_name":"Kazuyoshi Ikeda","orcid":"https://orcid.org/0000-0003-2820-1608"},"institutions":[{"id":"https://openalex.org/I142395110","display_name":"Astellas Pharma (Japan)","ror":"https://ror.org/01cjash87","country_code":"JP","type":"company","lineage":["https://openalex.org/I142395110"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuyoshi Ikeda","raw_affiliation_strings":["1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan","institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088521247","display_name":"Karlou Mar Amada","orcid":null},"institutions":[{"id":"https://openalex.org/I142395110","display_name":"Astellas Pharma (Japan)","ror":"https://ror.org/01cjash87","country_code":"JP","type":"company","lineage":["https://openalex.org/I142395110"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Karlou Amada","raw_affiliation_strings":["1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan","institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108381763","display_name":"Shide Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I142395110","display_name":"Astellas Pharma (Japan)","ror":"https://ror.org/01cjash87","country_code":"JP","type":"company","lineage":["https://openalex.org/I142395110"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shide Liang","raw_affiliation_strings":["1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan","institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053746895","display_name":"Yuko Tsuchiya","orcid":"https://orcid.org/0000-0002-7561-4256"},"institutions":[{"id":"https://openalex.org/I142395110","display_name":"Astellas Pharma (Japan)","ror":"https://ror.org/01cjash87","country_code":"JP","type":"company","lineage":["https://openalex.org/I142395110"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuko Tsuchiya","raw_affiliation_strings":["1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan","institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035143113","display_name":"Haruki Nakamura","orcid":"https://orcid.org/0000-0001-6690-5863"},"institutions":[{"id":"https://openalex.org/I142395110","display_name":"Astellas Pharma (Japan)","ror":"https://ror.org/01cjash87","country_code":"JP","type":"company","lineage":["https://openalex.org/I142395110"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Haruki Nakamura","raw_affiliation_strings":["1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan","institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111922082","display_name":"Hiroki Shirai","orcid":null},"institutions":[{"id":"https://openalex.org/I142395110","display_name":"Astellas Pharma (Japan)","ror":"https://ror.org/01cjash87","country_code":"JP","type":"company","lineage":["https://openalex.org/I142395110"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroki Shirai","raw_affiliation_strings":["1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan","institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003461562","display_name":"Daron M. Standley","orcid":"https://orcid.org/0000-0003-4078-0817"},"institutions":[{"id":"https://openalex.org/I142395110","display_name":"Astellas Pharma (Japan)","ror":"https://ror.org/01cjash87","country_code":"JP","type":"company","lineage":["https://openalex.org/I142395110"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Daron M. Standley","raw_affiliation_strings":["1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 WPI Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka 565-0871, 2 National Institute of Biomedical Innovation, Ibaraki City, Osaka 567-0085, 3 Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 and 4 Molecular Medicine Research Laboratories, Drug Discovery Research, Astellas Pharma Inc., Tsukuba, Ibaraki 305-8585, Japan","institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003461562"],"corresponding_institution_ids":["https://openalex.org/I142395110","https://openalex.org/I98285908"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.1196,"has_fulltext":false,"cited_by_count":51,"citation_normalized_percentile":{"value":0.91162162,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"30","issue":"22","first_page":"3279","last_page":"3280"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9495999813079834,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9495999813079834,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.02419999986886978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.003599999938160181,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.6524972915649414},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.6237618923187256},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5767089128494263},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.4947895407676697},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37378832697868347},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2233959436416626},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.15232175588607788},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14127621054649353},{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.10354357957839966},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.08885616064071655}],"concepts":[{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.6524972915649414},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.6237618923187256},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5767089128494263},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.4947895407676697},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37378832697868347},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2233959436416626},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.15232175588607788},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14127621054649353},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.10354357957839966},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.08885616064071655}],"mesh":[{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu510","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu510","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3279/48931083/bioinformatics_30_22_3279.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25064566","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25064566","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu510","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu510","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/22/3279/48931083/bioinformatics_30_22_3279.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323024","display_name":"Astellas Pharma","ror":"https://ror.org/01cjash87"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1891993075","https://openalex.org/W1978499958","https://openalex.org/W2010912149","https://openalex.org/W2025965594","https://openalex.org/W2094967734","https://openalex.org/W2103741674","https://openalex.org/W2105556561","https://openalex.org/W2117163574","https://openalex.org/W2124008432","https://openalex.org/W2154714625","https://openalex.org/W2162561057","https://openalex.org/W2167833742","https://openalex.org/W2186542288"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W4212954839","https://openalex.org/W3190051883"],"abstract_inverted_index":{"MOTIVATION:":[0],"Kotai":[1,78,101],"Antibody":[2,72,79,102],"Builder":[3,80,103],"is":[4,57,104],"a":[5,54],"Web":[6],"service":[7],"for":[8],"tertiary":[9],"structural":[10],"modeling":[11],"of":[12,18,33,90],"antibody":[13],"variable":[14],"regions.":[15],"It":[16],"consists":[17],"three":[19],"main":[20],"steps:":[21],"hybrid":[22],"template":[23],"selection":[24],"by":[25,64],"sequence":[26],"alignment":[27],"and":[28,35],"canonical":[29],"rules,":[30],"3D":[31],"rendering":[32],"alignments":[34],"CDR-H3":[36],"loop":[37],"modeling.":[38],"For":[39],"the":[40,51,70,91],"last":[41],"step,":[42],"in":[43],"addition":[44],"to":[45,49,88],"rule-based":[46],"heuristics":[47],"used":[48],"build":[50],"initial":[52],"model,":[53],"refinement":[55],"option":[56],"available":[58,105],"that":[59,77,89],"uses":[60],"fragment":[61],"assembly":[62],"followed":[63],"knowledge-based":[65],"scoring.":[66],"Using":[67],"targets":[68],"from":[69],"Second":[71],"Modeling":[73],"Assessment,":[74],"we":[75],"demonstrate":[76],"generates":[81],"models":[82],"with":[83],"an":[84],"overall":[85],"accuracy":[86],"equal":[87],"best-performing":[92],"semi-automated":[93],"predictors":[94],"using":[95],"expert":[96],"knowledge.":[97],"AVAILABILITY":[98],"AND":[99],"IMPLEMENTATION:":[100],"at":[106],"http://kotaiab.org":[107],"CONTACT:":[108],"standley@ifrec.osaka-u.ac.jp.":[109]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
