{"id":"https://openalex.org/W2160135160","doi":"https://doi.org/10.1093/bioinformatics/btu498","title":"<i>Biocellion</i> : accelerating computer simulation of multicellular biological system models","display_name":"<i>Biocellion</i> : accelerating computer simulation of multicellular biological system models","publication_year":2014,"publication_date":"2014-07-26","ids":{"openalex":"https://openalex.org/W2160135160","doi":"https://doi.org/10.1093/bioinformatics/btu498","mag":"2160135160","pmid":"https://pubmed.ncbi.nlm.nih.gov/25064572"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu498","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu498","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/21/3101/48930885/bioinformatics_30_21_3101.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/21/3101/48930885/bioinformatics_30_21_3101.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062348894","display_name":"Seunghwa Kang","orcid":null},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Seunghwa Kang","raw_affiliation_strings":["1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I121980950","https://openalex.org/I142606810","https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059198223","display_name":"Simon Kahan","orcid":"https://orcid.org/0000-0003-1202-4950"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simon Kahan","raw_affiliation_strings":["1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I121980950","https://openalex.org/I142606810","https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020608405","display_name":"Jason McDermott","orcid":"https://orcid.org/0000-0003-2961-2572"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason McDermott","raw_affiliation_strings":["1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I121980950","https://openalex.org/I142606810","https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033749663","display_name":"Nicholas S. Flann","orcid":"https://orcid.org/0000-0002-3100-8545"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Flann","raw_affiliation_strings":["1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I121980950","https://openalex.org/I142606810","https://openalex.org/I3148997608"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061460061","display_name":"Ilya Shmulevich","orcid":"https://orcid.org/0000-0002-4410-8780"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilya Shmulevich","raw_affiliation_strings":["1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Biology and Bioinformatics Group, 2 High-performance Computing Group, Pacific Northwest National Laboratory, Richland, WA 99354, USA, 3 Department of Computer Science, Utah State University, Logan, UT 84322, USA and 4 Institute for Systems Biology, Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I121980950","https://openalex.org/I142606810","https://openalex.org/I3148997608"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5062348894"],"corresponding_institution_ids":["https://openalex.org/I121980950","https://openalex.org/I142606810","https://openalex.org/I3148997608"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.2615,"has_fulltext":true,"cited_by_count":104,"citation_normalized_percentile":{"value":0.96029015,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"30","issue":"21","first_page":"3101","last_page":"3108"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13362","display_name":"Slime Mold and Myxomycetes Research","score":0.6348999738693237,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13362","display_name":"Slime Mold and Myxomycetes Research","score":0.6348999738693237,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.07540000230073929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.0731000006198883,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8257647752761841},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.593829870223999},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.5165435671806335},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5006892681121826},{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.4737038314342499},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.47228819131851196},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.46102815866470337},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.4124663770198822},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30937451124191284},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.30688172578811646},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15274286270141602}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8257647752761841},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.593829870223999},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.5165435671806335},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5006892681121826},{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.4737038314342499},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.47228819131851196},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.46102815866470337},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.4124663770198822},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30937451124191284},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.30688172578811646},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15274286270141602},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu498","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu498","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/21/3101/48930885/bioinformatics_30_21_3101.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25064572","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25064572","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4609016","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4609016","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu498","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu498","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/21/3101/48930885/bioinformatics_30_21_3101.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.41999998688697815}],"awards":[],"funders":[{"id":"https://openalex.org/F4320325302","display_name":"Shanghai Ocean University","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2160135160.pdf","grobid_xml":"https://content.openalex.org/works/W2160135160.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W18575304","https://openalex.org/W51719658","https://openalex.org/W1510118806","https://openalex.org/W1530872699","https://openalex.org/W1567580433","https://openalex.org/W1974673184","https://openalex.org/W1977973890","https://openalex.org/W1989868736","https://openalex.org/W1997542937","https://openalex.org/W2000716863","https://openalex.org/W2002785668","https://openalex.org/W2011346928","https://openalex.org/W2037084561","https://openalex.org/W2040890820","https://openalex.org/W2047722687","https://openalex.org/W2048195900","https://openalex.org/W2049161806","https://openalex.org/W2053519267","https://openalex.org/W2074954154","https://openalex.org/W2081781433","https://openalex.org/W2090453523","https://openalex.org/W2095174623","https://openalex.org/W2095375294","https://openalex.org/W2098919112","https://openalex.org/W2100345558","https://openalex.org/W2104903940","https://openalex.org/W2105135903","https://openalex.org/W2117899937","https://openalex.org/W2131395554","https://openalex.org/W2134836525","https://openalex.org/W2139802217","https://openalex.org/W2151137638","https://openalex.org/W2159084624","https://openalex.org/W2210900609","https://openalex.org/W2285102836","https://openalex.org/W2527677446","https://openalex.org/W2530014580","https://openalex.org/W6630521804","https://openalex.org/W6653234002","https://openalex.org/W6728258993"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W1590307681","https://openalex.org/W1963836821","https://openalex.org/W4312814274","https://openalex.org/W4285370786","https://openalex.org/W2522472446","https://openalex.org/W2296488620","https://openalex.org/W2358353312"],"abstract_inverted_index":{"MOTIVATION:":[0],"Biological":[1],"system":[2,32,60,130,179,201],"behaviors":[3],"are":[4],"often":[5],"the":[6,50,63,87,91,142,196],"outcome":[7],"of":[8,15,66,127,145],"complex":[9],"interactions":[10],"among":[11],"a":[12,54,110,124,177],"large":[13,80],"number":[14],"cells":[16],"and":[17,20,29,37,103,176,202],"their":[18,137],"biotic":[19],"abiotic":[21],"environment.":[22],"Computational":[23],"biologists":[24,71],"attempt":[25],"to":[26,48,72,74,78,89,114,135],"understand,":[27],"predict":[28],"manipulate":[30],"biological":[31,59,81,129],"behavior":[33],"through":[34],"mathematical":[35],"modeling":[36,42],"computer":[38],"simulation.":[39],"Discrete":[40],"agent-based":[41],"(in":[43],"combination":[44],"with":[45,161,195],"high-resolution":[46],"grids":[47],"model":[49,138,147],"extracellular":[51],"environment)":[52],"is":[53,101,203],"popular":[55],"approach":[56,68],"for":[57,98,206,211],"building":[58],"models.":[61],"However,":[62],"computational":[64,70],"complexity":[65],"this":[67,116],"forces":[69],"resort":[73],"coarser":[75],"resolution":[76],"approaches":[77],"simulate":[79,171],"systems.":[82],"High-performance":[83],"parallel":[84,99,120,153,159],"computers":[85,100,160],"have":[86,107],"potential":[88],"address":[90],"computing":[92,117,154],"challenge,":[93],"but":[94],"writing":[95,165],"efficient":[96],"software":[97,112],"difficult":[102],"time-consuming.":[104],"RESULTS:":[105],"We":[106,170],"developed":[108],"Biocellion,":[109,150],"high-performance":[111],"framework,":[113],"solve":[115],"challenge":[118],"using":[119],"computers.":[121],"To":[122],"support":[123],"wide":[125],"range":[126],"multicellular":[128],"models,":[131],"Biocellion":[132,189],"asks":[133],"users":[134],"provide":[136],"specifics":[139],"by":[140],"filling":[141],"function":[143],"body":[144],"pre-defined":[146],"routines.":[148],"Using":[149],"modelers":[151],"without":[152],"expertise":[155],"can":[156],"efficiently":[157],"exploit":[158],"less":[162],"effort":[163],"than":[164],"sequential":[166],"programs":[167],"from":[168],"scratch.":[169],"cell":[172],"sorting,":[173],"microbial":[174],"patterning":[175],"bacterial":[178],"in":[180],"soil":[181],"aggregate":[182],"as":[183],"case":[184],"studies.":[185],"AVAILABILITY":[186],"AND":[187],"IMPLEMENTATION:":[188],"runs":[190],"on":[191],"x86":[192],"compatible":[193],"systems":[194],"64":[197],"bit":[198],"Linux":[199],"operating":[200],"freely":[204],"available":[205],"academic":[207],"use.":[208],"Visit":[209],"http://biocellion.com":[210],"additional":[212],"information.":[213]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":8}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2016-06-24T00:00:00"}