{"id":"https://openalex.org/W2159940675","doi":"https://doi.org/10.1093/bioinformatics/btu456","title":"Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis","display_name":"Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis","publication_year":2014,"publication_date":"2014-08-22","ids":{"openalex":"https://openalex.org/W2159940675","doi":"https://doi.org/10.1093/bioinformatics/btu456","mag":"2159940675","pmid":"https://pubmed.ncbi.nlm.nih.gov/25161239"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu456","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu456","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i497/48927005/bioinformatics_30_17_i497.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i497/48927005/bioinformatics_30_17_i497.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028161029","display_name":"Suleiman A. Khan","orcid":"https://orcid.org/0000-0002-0823-4042"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Suleiman A. Khan","raw_affiliation_strings":["1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I175532246","https://openalex.org/I32943570","https://openalex.org/I4210133586","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000486333","display_name":"Seppo Virtanen","orcid":"https://orcid.org/0000-0001-9556-1369"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Seppo Virtanen","raw_affiliation_strings":["1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I175532246","https://openalex.org/I32943570","https://openalex.org/I4210133586","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050670008","display_name":"Olli Kallioniemi","orcid":"https://orcid.org/0000-0002-3231-0332"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Olli P. Kallioniemi","raw_affiliation_strings":["1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I175532246","https://openalex.org/I32943570","https://openalex.org/I4210133586","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067760174","display_name":"Krister Wennerberg","orcid":"https://orcid.org/0000-0002-1352-4220"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Krister Wennerberg","raw_affiliation_strings":["1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I175532246","https://openalex.org/I32943570","https://openalex.org/I4210133586","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074083544","display_name":"Antti Poso","orcid":"https://orcid.org/0000-0003-4196-4204"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Antti Poso","raw_affiliation_strings":["1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I175532246","https://openalex.org/I32943570","https://openalex.org/I4210133586","https://openalex.org/I9927081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski","orcid":"https://orcid.org/0000-0003-1925-9154"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Information and Computer Science, Helsinki Institute for Information Technology HIIT, Aalto University, 00076 Espoo, 2Institute for Molecular Medicine Finland FIMM, University of Helsinki, 00014 Helsinki, 3School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, 70211 Kuopio and 4Department of Computer Science, Helsinki Institute for Information Technology HIIT, University Of Helsinki, 00014 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I175532246","https://openalex.org/I32943570","https://openalex.org/I4210133586","https://openalex.org/I9927081"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5018305257","https://openalex.org/A5028161029"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I175532246","https://openalex.org/I32943570","https://openalex.org/I4210133586","https://openalex.org/I9927081"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.9678,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.96727834,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"30","issue":"17","first_page":"i497","last_page":"i504"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7419000267982483,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7419000267982483,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.17000000178813934,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11533","display_name":"Melanoma and MAPK Pathways","score":0.0071000000461936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6640371084213257},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.499387264251709},{"id":"https://openalex.org/keywords/drug-response","display_name":"Drug response","score":0.4840661585330963},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.44114017486572266},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4137605130672455},{"id":"https://openalex.org/keywords/cancer-cell-lines","display_name":"Cancer cell lines","score":0.412568062543869},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40903013944625854},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33706992864608765},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.31198668479919434},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29347488284111023},{"id":"https://openalex.org/keywords/cancer-cell","display_name":"Cancer cell","score":0.20384880900382996},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19230341911315918},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.15878203511238098}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6640371084213257},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.499387264251709},{"id":"https://openalex.org/C2994119904","wikidata":"https://www.wikidata.org/wiki/Q1251001","display_name":"Drug response","level":3,"score":0.4840661585330963},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.44114017486572266},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4137605130672455},{"id":"https://openalex.org/C2994372470","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell lines","level":4,"score":0.412568062543869},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40903013944625854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33706992864608765},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.31198668479919434},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29347488284111023},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.20384880900382996},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19230341911315918},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.15878203511238098},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu456","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu456","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i497/48927005/bioinformatics_30_17_i497.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25161239","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25161239","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4147909","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4147909","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:helda.helsinki.fi:10138/225154","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/225154","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu456","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu456","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i497/48927005/bioinformatics_30_17_i497.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322282","display_name":"Jane ja Aatos Erkon S\u00e4\u00e4ti\u00f6","ror":"https://ror.org/03vxy9y38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2159940675.pdf","grobid_xml":"https://content.openalex.org/works/W2159940675.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1567512734","https://openalex.org/W1988037271","https://openalex.org/W1988317773","https://openalex.org/W1989478757","https://openalex.org/W1996722392","https://openalex.org/W1998848097","https://openalex.org/W2016627771","https://openalex.org/W2023632132","https://openalex.org/W2023947478","https://openalex.org/W2025341678","https://openalex.org/W2033377040","https://openalex.org/W2036508369","https://openalex.org/W2048435239","https://openalex.org/W2052396986","https://openalex.org/W2063060349","https://openalex.org/W2079472356","https://openalex.org/W2081382204","https://openalex.org/W2082268631","https://openalex.org/W2088545291","https://openalex.org/W2089051326","https://openalex.org/W2094791588","https://openalex.org/W2100811683","https://openalex.org/W2104366126","https://openalex.org/W2109972881","https://openalex.org/W2113072832","https://openalex.org/W2121604817","https://openalex.org/W2129860849","https://openalex.org/W2130336429","https://openalex.org/W2132397045","https://openalex.org/W2138512826","https://openalex.org/W2141753187","https://openalex.org/W2144903813","https://openalex.org/W2148135357","https://openalex.org/W2151910430","https://openalex.org/W2155157373","https://openalex.org/W2169815691","https://openalex.org/W2269544137","https://openalex.org/W2441854741","https://openalex.org/W6633735129","https://openalex.org/W6681437887"],"related_works":["https://openalex.org/W2030640333","https://openalex.org/W1872127137","https://openalex.org/W3164573509","https://openalex.org/W3128881704","https://openalex.org/W2599768688","https://openalex.org/W2027675659","https://openalex.org/W3081972356","https://openalex.org/W2365243819","https://openalex.org/W2791080384","https://openalex.org/W3008093769"],"abstract_inverted_index":{"MOTIVATION:":[0],"Analysis":[1],"of":[2,4,36,40,43,50,70,103,121,138,221,229,235],"relationships":[3],"drug":[5,17,27,93],"structure":[6,69],"to":[7,12,25,99,217],"biological":[8],"response":[9,94],"is":[10,88,245],"key":[11],"understanding":[13],"off-target":[14],"and":[15,19,105,151,172,179,191,211,224],"unexpected":[16],"effects,":[18],"for":[20,33,92,159],"developing":[21],"hypotheses":[22],"on":[23,65,73,170],"how":[24,66],"tailor":[26],"therapies.":[28],"New":[29],"methods":[30,169],"are":[31,215,253],"required":[32],"integrated":[34],"analyses":[35],"a":[37,122],"large":[38],"number":[39],"chemical":[41,68,107],"features":[42,108],"drugs":[44,71,104,139],"against":[45],"the":[46,60,67,106,135,147,160,166,175,204,218,222,225,233,243],"corresponding":[47],"genome-wide":[48,74],"responses":[49,144],"multiple":[51,97,188],"cell":[52,80,149,189],"models.":[53],"RESULTS:":[54],"In":[55],"this":[56],"article,":[57],"we":[58],"present":[59],"first":[61],"comprehensive":[62],"multi-set":[63],"analysis":[64],"impacts":[72],"gene":[75,142],"expression":[76,143],"across":[77,96],"several":[78,180],"cancer":[79],"lines":[81,150,190],"[Connectivity":[82],"Map":[83],"(CMap)":[84],"database].":[85],"The":[86,113,196],"task":[87],"formulated":[89],"as":[90],"searching":[91],"components":[95,114,132],"cancers":[98],"reveal":[100],"shared":[101],"effects":[102,205,234],"that":[109,133,155],"may":[110,156],"be":[111,116,157],"responsible.":[112],"can":[115],"computed":[117],"with":[118,140],"an":[119],"extension":[120],"recent":[123],"approach":[124],"called":[125],"Group":[126],"Factor":[127],"Analysis.":[128],"We":[129],"identify":[130,152],"11":[131],"link":[134],"structural":[136,153,194],"descriptors":[137,220],"specific":[141],"observed":[145],"in":[146,203],"three":[148],"groups":[154],"responsible":[158],"responses.":[161],"Our":[162],"method":[163,244],"quantitatively":[164],"outperforms":[165],"limited":[167],"earlier":[168],"CMap":[171],"identifies":[173],"both":[174],"previously":[176,200],"reported":[177],"associations":[178],"interesting":[181],"novel":[182,197],"findings,":[183],"by":[184,207,227],"taking":[185],"into":[186],"account":[187],"advanced":[192],"3D":[193,219],"descriptors.":[195],"observations":[198],"include:":[199],"unknown":[201],"similarities":[202],"induced":[206],"15-delta":[208],"prostaglandin":[209],"J2":[210],"HSP90":[212],"inhibitors,":[213],"which":[214],"linked":[216],"drugs;":[223],"induction":[226],"simvastatin":[228],"leukemia-specific":[230],"response,":[231],"resembling":[232],"corticosteroids.":[236],"AVAILABILITY":[237],"AND":[238],"IMPLEMENTATION:":[239],"Source":[240],"Code":[241],"implementing":[242],"available":[246,254],"at:":[247],"http://research.ics.aalto.fi/mi/software/GFAsparse.":[248],"SUPPLEMENTARY":[249],"INFORMATION:":[250],"Supplementary":[251],"data":[252],"at":[255],"Bioinformatics":[256],"online.":[257]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
