{"id":"https://openalex.org/W2103858997","doi":"https://doi.org/10.1093/bioinformatics/btu454","title":"TEMPI: probabilistic modeling time-evolving differential PPI networks with multiPle information","display_name":"TEMPI: probabilistic modeling time-evolving differential PPI networks with multiPle information","publication_year":2014,"publication_date":"2014-08-22","ids":{"openalex":"https://openalex.org/W2103858997","doi":"https://doi.org/10.1093/bioinformatics/btu454","mag":"2103858997","pmid":"https://pubmed.ncbi.nlm.nih.gov/25161233"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu454","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i453/17150072/btu454.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i453/17150072/btu454.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101555341","display_name":"Yongsoo Kim","orcid":"https://orcid.org/0000-0002-2995-2131"},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]},{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Yongsoo Kim","raw_affiliation_strings":["1 School of Interdisciplinary Bioscience and Bioengineering and 2Department of Computer Science and Engineering, Pohang University of Science and Technology, Pohang 790-784, Korea and 3Department of New Biology and Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea"],"affiliations":[{"raw_affiliation_string":"1 School of Interdisciplinary Bioscience and Bioengineering and 2Department of Computer Science and Engineering, Pohang University of Science and Technology, Pohang 790-784, Korea and 3Department of New Biology and Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea","institution_ids":["https://openalex.org/I193352282","https://openalex.org/I4210104335","https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109213645","display_name":"Jin-Hyeok Jang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]},{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jin-Hyeok Jang","raw_affiliation_strings":["1 School of Interdisciplinary Bioscience and Bioengineering and 2Department of Computer Science and Engineering, Pohang University of Science and Technology, Pohang 790-784, Korea and 3Department of New Biology and Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea"],"affiliations":[{"raw_affiliation_string":"1 School of Interdisciplinary Bioscience and Bioengineering and 2Department of Computer Science and Engineering, Pohang University of Science and Technology, Pohang 790-784, Korea and 3Department of New Biology and Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea","institution_ids":["https://openalex.org/I193352282","https://openalex.org/I4210104335","https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066405061","display_name":"Seungjin Choi","orcid":"https://orcid.org/0000-0002-7873-4616"},"institutions":[{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]},{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]},{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seungjin Choi","raw_affiliation_strings":["1 School of Interdisciplinary Bioscience and Bioengineering and 2Department of Computer Science and Engineering, Pohang University of Science and Technology, Pohang 790-784, Korea and 3Department of New Biology and Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea"],"affiliations":[{"raw_affiliation_string":"1 School of Interdisciplinary Bioscience and Bioengineering and 2Department of Computer Science and Engineering, Pohang University of Science and Technology, Pohang 790-784, Korea and 3Department of New Biology and Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea","institution_ids":["https://openalex.org/I193352282","https://openalex.org/I4210104335","https://openalex.org/I123900574"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027374744","display_name":"Daehee Hwang","orcid":"https://orcid.org/0000-0002-7553-0044"},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]},{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]},{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Daehee Hwang","raw_affiliation_strings":["1 School of Interdisciplinary Bioscience and Bioengineering and 2Department of Computer Science and Engineering, Pohang University of Science and Technology, Pohang 790-784, Korea and 3Department of New Biology and Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea"],"affiliations":[{"raw_affiliation_string":"1 School of Interdisciplinary Bioscience and Bioengineering and 2Department of Computer Science and Engineering, Pohang University of Science and Technology, Pohang 790-784, Korea and 3Department of New Biology and Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea","institution_ids":["https://openalex.org/I193352282","https://openalex.org/I4210104335","https://openalex.org/I123900574"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101555341"],"corresponding_institution_ids":["https://openalex.org/I123900574","https://openalex.org/I193352282","https://openalex.org/I4210104335"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2847,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.60435899,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"30","issue":"17","first_page":"i453","last_page":"i460"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.8234472274780273},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7047369480133057},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6448041200637817},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.5134702324867249},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.49812960624694824},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.42448747158050537},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28304213285446167},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2050682008266449},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1720058023929596},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12343484163284302},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09948155283927917}],"concepts":[{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.8234472274780273},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7047369480133057},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6448041200637817},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.5134702324867249},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.49812960624694824},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.42448747158050537},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28304213285446167},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2050682008266449},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1720058023929596},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12343484163284302},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09948155283927917},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btu454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu454","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i453/17150072/btu454.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25161233","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25161233","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:oasis.postech.ac.kr:2014.oak/13953","is_oa":false,"landing_page_url":"https://oasis.postech.ac.kr/handle/2014.oak/13953","pdf_url":null,"source":{"id":"https://openalex.org/S4306401965","display_name":"Open Access System for Information Sharing (Pohang University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123900574","host_organization_name":"Pohang University of Science and Technology","host_organization_lineage":["https://openalex.org/I123900574"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4147907","is_oa":true,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btu454","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:vumc:oai:pure.atira.dk:publications/d39b13cb-800b-4236-89b9-f1f3dfc689c4","is_oa":true,"landing_page_url":"https://research.vumc.nl/en/publications/d39b13cb-800b-4236-89b9-f1f3dfc689c4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 30(17). Oxford University Press","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu454","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i453/17150072/btu454.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103858997.pdf","grobid_xml":"https://content.openalex.org/works/W2103858997.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1965055200","https://openalex.org/W1967834407","https://openalex.org/W2008086549","https://openalex.org/W2049047355","https://openalex.org/W2065304353","https://openalex.org/W2072009200","https://openalex.org/W2073506826","https://openalex.org/W2095588912","https://openalex.org/W2103453943","https://openalex.org/W2105129830","https://openalex.org/W2109248504","https://openalex.org/W2113654464","https://openalex.org/W2114324579","https://openalex.org/W2115979064","https://openalex.org/W2116447934","https://openalex.org/W2122037201","https://openalex.org/W2122076882","https://openalex.org/W2125673723","https://openalex.org/W2127293863","https://openalex.org/W2138309709","https://openalex.org/W2145823109","https://openalex.org/W2146997276","https://openalex.org/W2149579404","https://openalex.org/W2151326548","https://openalex.org/W2155004936","https://openalex.org/W2159444728","https://openalex.org/W2163485494","https://openalex.org/W2166468869","https://openalex.org/W2167869241","https://openalex.org/W2169889998","https://openalex.org/W2611370172","https://openalex.org/W6677308353","https://openalex.org/W6681658115"],"related_works":["https://openalex.org/W4290792893","https://openalex.org/W2211820962","https://openalex.org/W2163814182","https://openalex.org/W2799169208","https://openalex.org/W2367950322","https://openalex.org/W202916971","https://openalex.org/W1541017616","https://openalex.org/W2348097614","https://openalex.org/W2149021950","https://openalex.org/W2777527666"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
