{"id":"https://openalex.org/W2120558414","doi":"https://doi.org/10.1093/bioinformatics/btu449","title":"Personalized identification of altered pathways in cancer using accumulated normal tissue data","display_name":"Personalized identification of altered pathways in cancer using accumulated normal tissue data","publication_year":2014,"publication_date":"2014-08-22","ids":{"openalex":"https://openalex.org/W2120558414","doi":"https://doi.org/10.1093/bioinformatics/btu449","mag":"2120558414","pmid":"https://pubmed.ncbi.nlm.nih.gov/25161229"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i422/48927586/bioinformatics_30_17_i422.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i422/48927586/bioinformatics_30_17_i422.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009861775","display_name":"TaeJin Ahn","orcid":"https://orcid.org/0000-0001-5165-2744"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I2250650973","display_name":"Samsung (South Korea)","ror":"https://ror.org/04w3jy968","country_code":"KR","type":"company","lineage":["https://openalex.org/I2250650973"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"TaeJin Ahn","raw_affiliation_strings":["1 Samsung Advanced Institute of Technology, 130, Suwon-si, Gyeonggi-do, 443-803, Korea, 2Samsung Genome Institute, Seoul, 135-710, Korea, 3Interdisciplinary Program in Bioinformatics and 4Department of Statistics, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Samsung Advanced Institute of Technology, 130, Suwon-si, Gyeonggi-do, 443-803, Korea, 2Samsung Genome Institute, Seoul, 135-710, Korea, 3Interdisciplinary Program in Bioinformatics and 4Department of Statistics, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I2250650973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100630683","display_name":"Eun-Jin Lee","orcid":"https://orcid.org/0000-0001-7010-6132"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I2250650973","display_name":"Samsung (South Korea)","ror":"https://ror.org/04w3jy968","country_code":"KR","type":"company","lineage":["https://openalex.org/I2250650973"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Eunjin Lee","raw_affiliation_strings":["1 Samsung Advanced Institute of Technology, 130, Suwon-si, Gyeonggi-do, 443-803, Korea, 2Samsung Genome Institute, Seoul, 135-710, Korea, 3Interdisciplinary Program in Bioinformatics and 4Department of Statistics, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Samsung Advanced Institute of Technology, 130, Suwon-si, Gyeonggi-do, 443-803, Korea, 2Samsung Genome Institute, Seoul, 135-710, Korea, 3Interdisciplinary Program in Bioinformatics and 4Department of Statistics, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I2250650973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108398648","display_name":"Nam Huh","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I2250650973","display_name":"Samsung (South Korea)","ror":"https://ror.org/04w3jy968","country_code":"KR","type":"company","lineage":["https://openalex.org/I2250650973"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Nam Huh","raw_affiliation_strings":["1 Samsung Advanced Institute of Technology, 130, Suwon-si, Gyeonggi-do, 443-803, Korea, 2Samsung Genome Institute, Seoul, 135-710, Korea, 3Interdisciplinary Program in Bioinformatics and 4Department of Statistics, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Samsung Advanced Institute of Technology, 130, Suwon-si, Gyeonggi-do, 443-803, Korea, 2Samsung Genome Institute, Seoul, 135-710, Korea, 3Interdisciplinary Program in Bioinformatics and 4Department of Statistics, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I2250650973"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100643662","display_name":"Taesung Park","orcid":"https://orcid.org/0000-0002-8294-590X"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I2250650973","display_name":"Samsung (South Korea)","ror":"https://ror.org/04w3jy968","country_code":"KR","type":"company","lineage":["https://openalex.org/I2250650973"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Taesung Park","raw_affiliation_strings":["1 Samsung Advanced Institute of Technology, 130, Suwon-si, Gyeonggi-do, 443-803, Korea, 2Samsung Genome Institute, Seoul, 135-710, Korea, 3Interdisciplinary Program in Bioinformatics and 4Department of Statistics, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Samsung Advanced Institute of Technology, 130, Suwon-si, Gyeonggi-do, 443-803, Korea, 2Samsung Genome Institute, Seoul, 135-710, Korea, 3Interdisciplinary Program in Bioinformatics and 4Department of Statistics, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I2250650973"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100643662","https://openalex.org/A5108398648"],"corresponding_institution_ids":["https://openalex.org/I139264467","https://openalex.org/I2250650973"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.1087,"has_fulltext":false,"cited_by_count":85,"citation_normalized_percentile":{"value":0.97401345,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"30","issue":"17","first_page":"i422","last_page":"i429"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7657999992370605,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7657999992370605,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.020400000736117363,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6668769717216492},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6211049556732178},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.604000449180603},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.5407305955886841},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5020759105682373},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3705132007598877},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3499077260494232},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33085620403289795},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.2600577473640442},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.14813128113746643}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6668769717216492},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6211049556732178},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.604000449180603},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.5407305955886841},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5020759105682373},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3705132007598877},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3499077260494232},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33085620403289795},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2600577473640442},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.14813128113746643},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D000230","descriptor_name":"Adenocarcinoma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i422/48927586/bioinformatics_30_17_i422.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25161229","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25161229","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4147902","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4147902","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/i422/48927586/bioinformatics_30_17_i422.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1973025982","https://openalex.org/W1983015752","https://openalex.org/W2000771269","https://openalex.org/W2011417152","https://openalex.org/W2020624823","https://openalex.org/W2026610595","https://openalex.org/W2028133290","https://openalex.org/W2041413731","https://openalex.org/W2044545697","https://openalex.org/W2046759180","https://openalex.org/W2070544303","https://openalex.org/W2070605698","https://openalex.org/W2078693224","https://openalex.org/W2100714130","https://openalex.org/W2100980426","https://openalex.org/W2101136061","https://openalex.org/W2101182718","https://openalex.org/W2104108814","https://openalex.org/W2114739452","https://openalex.org/W2118258530","https://openalex.org/W2120865735","https://openalex.org/W2121824548","https://openalex.org/W2130410032","https://openalex.org/W2138137742","https://openalex.org/W2138849374","https://openalex.org/W2146303969","https://openalex.org/W2147925490","https://openalex.org/W2154941270","https://openalex.org/W2167119716","https://openalex.org/W2170989872","https://openalex.org/W6680561091"],"related_works":["https://openalex.org/W2374019147","https://openalex.org/W2015369371","https://openalex.org/W2370262613","https://openalex.org/W2064573700","https://openalex.org/W4362606997","https://openalex.org/W2554284703","https://openalex.org/W2172237894","https://openalex.org/W4377092742","https://openalex.org/W4229447658","https://openalex.org/W4361825250"],"abstract_inverted_index":{"MOTIVATION:":[0],"Identifying":[1],"altered":[2,31,99],"pathways":[3,32,201,223],"in":[4,50,85,108,232,244],"an":[5,51,129],"individual":[6,52,81,130],"is":[7,62,123,230,242,262,282],"important":[8],"for":[9,14,42,94],"understanding":[10],"disease":[11],"mechanisms":[12],"and":[13,35,38,66,142,151,170,188,202,212,259],"the":[15,44,70,74,79,95,126,204,233,270,280,305],"future":[16],"application":[17],"of":[18,98,104,128,146,165,168,181,184,198,221,235,266,279,286],"custom":[19],"therapeutic":[20],"decisions.":[21],"Existing":[22],"pathway":[23,45,60,132,147,158,205,261,284],"analysis":[24,150],"techniques":[25],"are":[26,39,82,116,173,295,318],"mainly":[27],"focused":[28],"on":[29],"discovering":[30],"between":[33],"normal":[34,65,76,106,114,138,166,251,293],"cancer":[36,182,199,209,228,249],"groups":[37],"not":[40],"suitable":[41],"identifying":[43],"aberrance":[46,61,127,159],"that":[47,207],"may":[48],"occur":[49],"sample.":[53],"A":[54],"simple":[55],"way":[56],"to":[57,63,124,155,177],"identify":[58],"individual's":[59],"compare":[64],"tumor":[67],"data":[68,77,107,115,164,294,317],"from":[69,78],"same":[71,80],"individual.":[72],"However,":[73],"matched":[75,113,292],"often":[83],"unavailable":[84],"clinical":[86],"situation.":[87],"Therefore,":[88],"we":[89,254],"suggest":[90],"a":[91,111,179,226,263],"new":[92],"approach":[93],"personalized":[96,144],"identification":[97],"pathways,":[100],"making":[101],"special":[102],"use":[103],"accumulated":[105,137],"cases":[109],"when":[110,225],"patient's":[112],"unavailable.":[117,296],"The":[118,300],"philosophy":[119],"behind":[120],"our":[121,240,310],"method":[122,193,241,281,301],"quantify":[125],"sample's":[131],"by":[133],"comparing":[134],"it":[135],"with":[136],"samples.":[139],"We":[140],"propose":[141],"examine":[143],"extensions":[145],"statistics,":[148],"overrepresentation":[149],"functional":[152],"class":[153],"scoring,":[154],"generate":[156],"individualized":[157],"score.":[160],"RESULTS:":[161],"Collected":[162],"microarray":[163],"tissue":[167],"lung":[169,185],"colon":[171,189],"mucosa":[172],"served":[174],"as":[175],"reference":[176],"investigate":[178],"number":[180],"individuals":[183],"adenocarcinoma":[186],"(LUAD)":[187],"cancer,":[190,288],"respectively.":[191],"Our":[192],"concurrently":[194],"captures":[195],"known":[196],"facts":[197],"survival":[200],"identifies":[203],"aberrances":[206],"represent":[208],"differentiation":[210],"status":[211],"survival.":[213],"It":[214],"also":[215],"provides":[216],"more":[217],"improved":[218],"validation":[219],"rate":[220],"survival-related":[222],"than":[224],"single":[227,287],"sample":[229],"interpreted":[231],"context":[234],"cancer-only":[236],"cohort.":[237],"In":[238],"addition,":[239],"useful":[243],"classifying":[245],"unknown":[246],"samples":[247],"into":[248],"or":[250],"groups.":[252],"Particularly,":[253],"identified":[255],"'amino":[256],"acid":[257],"synthesis":[258],"interconversion'":[260],"good":[264],"indicator":[265],"LUAD":[267],"(Area":[268],"Under":[269],"Curve":[271],"(AUC)":[272],"0.982":[273],"at":[274,309,320],"independent":[275],"validation).":[276],"Clinical":[277],"importance":[278],"providing":[283],"interpretation":[285],"even":[289],"though":[290],"its":[291],"AVAILABILITY":[297],"AND":[298],"IMPLEMENTATION:":[299],"was":[302],"implemented":[303],"using":[304],"R":[306],"software,":[307],"available":[308,319],"Web":[311],"site:":[312],"http://bibs.snu.ac.kr/ipas.":[313],"SUPPLEMENTARY":[314],"INFORMATION:":[315],"Supplementary":[316],"Bioinformatics":[321],"online.":[322]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":31},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
