{"id":"https://openalex.org/W2149304246","doi":"https://doi.org/10.1093/bioinformatics/btu412","title":"Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013","display_name":"Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013","publication_year":2014,"publication_date":"2014-07-14","ids":{"openalex":"https://openalex.org/W2149304246","doi":"https://doi.org/10.1093/bioinformatics/btu412","mag":"2149304246","pmid":"https://pubmed.ncbi.nlm.nih.gov/25024289"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu412","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/2/297/49011339/bioinformatics_31_2_297.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/2/297/49011339/bioinformatics_31_2_297.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067214173","display_name":"Karin Verspoor","orcid":"https://orcid.org/0000-0002-8661-1544"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Karin Verspoor","raw_affiliation_strings":["1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043310715","display_name":"Hagit Shatkay","orcid":"https://orcid.org/0000-0001-6953-3970"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Hagit Shatkay","raw_affiliation_strings":["1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068115280","display_name":"Lynette Hirschman","orcid":"https://orcid.org/0000-0001-8442-0720"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Lynette Hirschman","raw_affiliation_strings":["1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017361070","display_name":"Christian Blaschke","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Christian Blaschke","raw_affiliation_strings":["1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computing and Information Systems, The University of Melbourne, Parkville VIC 3010, Australia 2 Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA, 3 MITRE Corporation, Bedford, MA 01730, USA, 4 Spanish Institute of Bioinformatics, Madrid, Spain and 5 Spanish National Centre for Cancer Research, Madrid, Spain","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5067214173"],"corresponding_institution_ids":["https://openalex.org/I165779595","https://openalex.org/I86501945"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.11930283,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":"31","issue":"2","first_page":"297","last_page":"298"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4950834810733795}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4950834810733795}],"mesh":[{"descriptor_ui":"D003226","descriptor_name":"Congresses as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003226","descriptor_name":"Congresses as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003226","descriptor_name":"Congresses as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058028","descriptor_name":"Research Report","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058028","descriptor_name":"Research Report","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058028","descriptor_name":"Research Report","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu412","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/2/297/49011339/bioinformatics_31_2_297.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25024289","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25024289","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu412","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/2/297/49011339/bioinformatics_31_2_297.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310369","display_name":"National ICT Australia","ror":"https://ror.org/03q397159"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149304246.pdf","grobid_xml":"https://content.openalex.org/works/W2149304246.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1994306321","https://openalex.org/W2003601914","https://openalex.org/W2004910511","https://openalex.org/W2068094441","https://openalex.org/W2103017472","https://openalex.org/W2106797966","https://openalex.org/W2108791029","https://openalex.org/W2152228269","https://openalex.org/W3040671324"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1,25],"ISMB":[2],"Special":[3],"Interest":[4],"Group":[5],"on":[6],"Linking":[7],"Literature,":[8],"Information":[9],"and":[10,39,56,62],"Knowledge":[11],"for":[12,32,68],"Biology":[13],"(BioLINK)":[14],"organized":[15],"a":[16],"one-day":[17],"workshop":[18,29],"at":[19,79],"ISMB/ECCB":[20],"2013":[21],"in":[22,35],"Berlin,":[23],"Germany.":[24],"theme":[26],"of":[27,47,59,65],"the":[28,45,48,63],"was":[30],"'Roles":[31],"text":[33],"mining":[34],"biomedical":[36],"knowledge":[37],"discovery":[38],"translational":[40],"medicine'.":[41],"This":[42],"summary":[43],"reviews":[44],"outcomes":[46],"workshop.":[49],"Meeting":[50],"themes":[51],"included":[52],"concept":[53],"annotation":[54],"methods":[55],"applications,":[57],"extraction":[58],"biological":[60,69],"relationships":[61],"use":[64],"text-mined":[66],"data":[67,70],"analysis.":[71],"AVAILABILITY":[72],"AND":[73],"IMPLEMENTATION:":[74],"All":[75],"articles":[76],"are":[77],"available":[78],"http://biolinksig.org/proceedings-online/.":[80]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
