{"id":"https://openalex.org/W2140437680","doi":"https://doi.org/10.1093/bioinformatics/btu395","title":"Omega: an Overlap-graph<i>de novo</i>Assembler for Metagenomics","display_name":"Omega: an Overlap-graph<i>de novo</i>Assembler for Metagenomics","publication_year":2014,"publication_date":"2014-06-19","ids":{"openalex":"https://openalex.org/W2140437680","doi":"https://doi.org/10.1093/bioinformatics/btu395","mag":"2140437680","pmid":"https://pubmed.ncbi.nlm.nih.gov/24947750"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu395","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu395","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/19/2717/17143973/btu395.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/19/2717/17143973/btu395.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078558339","display_name":"Bahlul Haider","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bahlul Haider","raw_affiliation_strings":["1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047054370","display_name":"Tae-Hyuk Ahn","orcid":"https://orcid.org/0000-0002-7281-9459"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tae-Hyuk Ahn","raw_affiliation_strings":["1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091639455","display_name":"Brian Bushnell","orcid":"https://orcid.org/0000-0002-8140-0131"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Bushnell","raw_affiliation_strings":["1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058220449","display_name":"Juanjuan Chai","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juanjuan Chai","raw_affiliation_strings":["1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113671125","display_name":"Alex Copeland","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Copeland","raw_affiliation_strings":["1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I196679689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035236332","display_name":"Chongle Pan","orcid":"https://orcid.org/0000-0003-2860-0334"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chongle Pan","raw_affiliation_strings":["1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 and 2 U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I196679689"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5035236332"],"corresponding_institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I196679689"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.6788,"has_fulltext":true,"cited_by_count":96,"citation_normalized_percentile":{"value":0.96023423,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"30","issue":"19","first_page":"2717","last_page":"2722"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9312000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9312000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.019899999722838402,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.00930000003427267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.8492630124092102},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7876097559928894},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5847799777984619},{"id":"https://openalex.org/keywords/hash-table","display_name":"Hash table","score":0.557682991027832},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5550760626792908},{"id":"https://openalex.org/keywords/omega","display_name":"Omega","score":0.4823545813560486},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4735915958881378},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.42534786462783813},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4207960069179535},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39865973591804504},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.3364536762237549},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3293076753616333},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2538798153400421},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1546890139579773},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10432064533233643},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10290807485580444}],"concepts":[{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.8492630124092102},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7876097559928894},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5847799777984619},{"id":"https://openalex.org/C67388219","wikidata":"https://www.wikidata.org/wiki/Q207440","display_name":"Hash table","level":3,"score":0.557682991027832},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5550760626792908},{"id":"https://openalex.org/C2779557605","wikidata":"https://www.wikidata.org/wiki/Q9890","display_name":"Omega","level":2,"score":0.4823545813560486},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4735915958881378},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.42534786462783813},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4207960069179535},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39865973591804504},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.3364536762237549},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3293076753616333},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2538798153400421},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1546890139579773},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10432064533233643},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10290807485580444},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu395","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu395","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/19/2717/17143973/btu395.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24947750","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24947750","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu395","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu395","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/19/2717/17143973/btu395.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1489425746","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1528409558","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1719536385","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1799333409","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337506","funder_display_name":"Advanced Scientific Computing Research"},{"id":"https://openalex.org/G3049477530","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4423657506","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4957472368","display_name":null,"funder_award_id":". DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5602503670","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G5723425519","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G574648691","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320337547","funder_display_name":"Laboratory Directed Research and Development"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6486853205","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6911681599","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7148947613","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337547","funder_display_name":"Laboratory Directed Research and Development"},{"id":"https://openalex.org/G7205239661","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G7368046788","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337506","display_name":"Advanced Scientific Computing Research","ror":"https://ror.org/0012c7r22"},{"id":"https://openalex.org/F4320337547","display_name":"Laboratory Directed Research and Development","ror":"https://ror.org/01e41cf67"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140437680.pdf","grobid_xml":"https://content.openalex.org/works/W2140437680.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W280975","https://openalex.org/W1598134722","https://openalex.org/W1635391495","https://openalex.org/W1905818355","https://openalex.org/W1963951527","https://openalex.org/W1966822396","https://openalex.org/W2048818637","https://openalex.org/W2103441770","https://openalex.org/W2109848222","https://openalex.org/W2115501618","https://openalex.org/W2140059069","https://openalex.org/W2141920662","https://openalex.org/W2142749416","https://openalex.org/W2145044321","https://openalex.org/W2156104322","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2170551349","https://openalex.org/W2914081640","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2330186985","https://openalex.org/W2055448750","https://openalex.org/W2950447380","https://openalex.org/W2345730070","https://openalex.org/W2107854630","https://openalex.org/W4319294554","https://openalex.org/W1986608492","https://openalex.org/W3134563641","https://openalex.org/W2951702907","https://openalex.org/W2119121014"],"abstract_inverted_index":{"MOTIVATION:":[0],"Metagenomic":[1],"sequencing":[2,23],"allows":[3],"reconstruction":[4],"of":[5,25,42,63,124,128],"microbial":[6,26],"genomes":[7],"directly":[8],"from":[9],"environmental":[10],"samples.":[11],"Omega":[12,29,89,115,134],"(overlap-graph":[13],"metagenome":[14],"assembler)":[15],"was":[16,44],"developed":[17],"for":[18,146],"assembling":[19],"and":[20,50,67,72,87,99,142,158],"scaffolding":[21],"Illumina":[22,140],"data":[24],"communities.":[27],"RESULTS:":[28],"found":[30],"overlaps":[31],"between":[32],"reads":[33,43],"using":[34,74,121],"a":[35,95,103,122],"prefix/suffix":[36],"hash":[37],"table.":[38],"The":[39],"overlap":[40,65],"graph":[41,66,83],"simplified":[45],"by":[46],"removing":[47],"transitive":[48],"edges":[49],"trimming":[51],"short":[52],"branches.":[53],"Unitigs":[54],"were":[55],"generated":[56],"based":[57],"on":[58,94,102,111],"minimum":[59],"cost":[60],"flow":[61],"analysis":[62],"the":[64,112,125],"then":[68],"merged":[69],"to":[70],"contigs":[71],"scaffolds":[73],"mate-pair":[75],"information.":[76],"In":[77,107],"comparison":[78,108],"with":[79,109,155],"three":[80],"de":[81],"Bruijn":[82],"assemblers":[84],"(SOAPdenovo,":[85],"IDBA-UD":[86],"MetaVelvet),":[88],"provided":[90,116],"comparable":[91],"overall":[92,120],"performance":[93,101],"HiSeq":[96],"100-bp":[97],"dataset":[98],"superior":[100],"MiSeq":[104,113],"300-bp":[105],"dataset.":[106],"Celera":[110],"dataset,":[114],"more":[117,136],"continuous":[118],"assemblies":[119],"fraction":[123],"computing":[126],"time":[127],"existing":[129],"overlap-layout-consensus":[130],"assemblers.":[131],"This":[132],"indicates":[133],"can":[135],"efficiently":[137],"assemble":[138],"longer":[139],"reads,":[141],"at":[143,162],"deeper":[144],"coverage,":[145],"metagenomic":[147],"datasets.":[148],"AVAILABILITY":[149],"AND":[150],"IMPLEMENTATION:":[151],"Implemented":[152],"in":[153],"C++":[154],"source":[156],"code":[157],"binaries":[159],"freely":[160],"available":[161],"http://omega.omicsbio.org.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":17},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2016-06-24T00:00:00"}
