{"id":"https://openalex.org/W2148311385","doi":"https://doi.org/10.1093/bioinformatics/btu377","title":"MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure","display_name":"MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure","publication_year":2014,"publication_date":"2014-06-06","ids":{"openalex":"https://openalex.org/W2148311385","doi":"https://doi.org/10.1093/bioinformatics/btu377","mag":"2148311385","pmid":"https://pubmed.ncbi.nlm.nih.gov/24907367"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu377","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/19/2826/49872357/bioinformatics_30_19_2826.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/19/2826/49872357/bioinformatics_30_19_2826.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100410794","display_name":"Ji Hoon Kim","orcid":"https://orcid.org/0000-0002-0844-3047"},"institutions":[{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]},{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["AT","US"],"is_corresponding":true,"raw_author_name":"Jihoon Kim","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111779521","display_name":"\u00c9ric Levy","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Eric Levy","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058188391","display_name":"Alex Ferbrache","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]},{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Alex Ferbrache","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051551122","display_name":"Petra Stepanowsky","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]},{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Petra Stepanowsky","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037482372","display_name":"Claudiu Farcas","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Claudiu Farcas","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101688660","display_name":"Shuang Wang","orcid":"https://orcid.org/0000-0002-1907-1197"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Shuang Wang","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055605209","display_name":"Stefan F Brunner","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]},{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Stefan Brunner","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000116718","display_name":"Tyler Bath","orcid":"https://orcid.org/0000-0003-2601-178X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Tyler Bath","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071072809","display_name":"Yuan Wu","orcid":"https://orcid.org/0000-0001-8925-555X"},"institutions":[{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]},{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Yuan Wu","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084415954","display_name":"Lucila Ohno\u2010Machado","orcid":"https://orcid.org/0000-0002-8005-7327"},"institutions":[{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]},{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Lucila Ohno-Machado","raw_affiliation_strings":["1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Informatics, University of California at San Diego, 2 Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA 92093, USA, 3 Biomedical Informatics Program, School of Informatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria and 4 Department of Biostatistics and Biomedical Informatics, Duke University, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210136249","https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5100410794"],"corresponding_institution_ids":["https://openalex.org/I170897317","https://openalex.org/I4210136249"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5562,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.81812222,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"19","first_page":"2826","last_page":"2827"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.85875004529953},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.6137998104095459},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.5138090252876282},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.4904901683330536},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4483826458454132},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.4357357323169708},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.4292188584804535},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.4281395375728607},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4107350707054138},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3673524856567383},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34579208493232727},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.28615814447402954},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1635831892490387},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.13258090615272522}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.85875004529953},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.6137998104095459},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.5138090252876282},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.4904901683330536},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4483826458454132},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.4357357323169708},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.4292188584804535},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.4281395375728607},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4107350707054138},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3673524856567383},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34579208493232727},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.28615814447402954},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1635831892490387},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.13258090615272522},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu377","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/19/2826/49872357/bioinformatics_30_19_2826.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24907367","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24907367","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3144875","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4173015","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu377","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/19/2826/49872357/bioinformatics_30_19_2826.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2225737672","display_name":null,"funder_award_id":"U54HL108460","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3136917840","display_name":null,"funder_award_id":"U54HL10846","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148311385.pdf","grobid_xml":"https://content.openalex.org/works/W2148311385.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1964646665","https://openalex.org/W1966077133","https://openalex.org/W2021137575","https://openalex.org/W2033154154","https://openalex.org/W2033167804","https://openalex.org/W2057588450","https://openalex.org/W2112218501","https://openalex.org/W2112810020","https://openalex.org/W2120456037","https://openalex.org/W2131136499","https://openalex.org/W2146495977","https://openalex.org/W2147495091","https://openalex.org/W2152239989"],"related_works":["https://openalex.org/W3004735627","https://openalex.org/W617499796","https://openalex.org/W2350330939","https://openalex.org/W2076781891","https://openalex.org/W2795436054","https://openalex.org/W2319908218","https://openalex.org/W2021993413","https://openalex.org/W2161462353","https://openalex.org/W2060927359","https://openalex.org/W2358114636"],"abstract_inverted_index":{"MAGI":[0],"relies":[1],"on":[2],"the":[3],"Node.js":[4],"JavaScript":[5],"framework,":[6],"along":[7],"with":[8],"NVIDIA":[9],"CUDA":[10],"C,":[11],"PHP:":[12],"Hypertext":[13],"Preprocessor":[14],"(PHP),":[15],"Perl":[16],"and":[17],"R.":[18],"It":[19],"is":[20],"freely":[21],"available":[22],"at":[23],"http://magi.ucsd.edu.":[24]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
