{"id":"https://openalex.org/W2131878480","doi":"https://doi.org/10.1093/bioinformatics/btu359","title":"Massifquant: open-source Kalman filter-based XC-MS isotope trace feature detection","display_name":"Massifquant: open-source Kalman filter-based XC-MS isotope trace feature detection","publication_year":2014,"publication_date":"2014-05-28","ids":{"openalex":"https://openalex.org/W2131878480","doi":"https://doi.org/10.1093/bioinformatics/btu359","mag":"2131878480","pmid":"https://pubmed.ncbi.nlm.nih.gov/24872423"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu359","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu359","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2636/48929227/bioinformatics_30_18_2636.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2636/48929227/bioinformatics_30_18_2636.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007694645","display_name":"Christopher J. Conley","orcid":"https://orcid.org/0000-0001-9579-0081"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]},{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["SE","US"],"is_corresponding":true,"raw_author_name":"Christopher J. Conley","raw_affiliation_strings":["1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I100005738","https://openalex.org/I84218800","https://openalex.org/I161593684","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046228650","display_name":"Rob Smith","orcid":"https://orcid.org/0000-0002-1864-9110"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["SE","US"],"is_corresponding":false,"raw_author_name":"Rob Smith","raw_affiliation_strings":["1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I100005738","https://openalex.org/I84218800","https://openalex.org/I161593684","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016219669","display_name":"Ralf J. O. Torgrip","orcid":"https://orcid.org/0000-0001-6174-0211"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]},{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["SE","US"],"is_corresponding":false,"raw_author_name":"Ralf J. O. Torgrip","raw_affiliation_strings":["1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I100005738","https://openalex.org/I84218800","https://openalex.org/I161593684","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108101195","display_name":"Ryan M. Taylor","orcid":null},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["SE","US"],"is_corresponding":false,"raw_author_name":"Ryan M. Taylor","raw_affiliation_strings":["1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I100005738","https://openalex.org/I84218800","https://openalex.org/I161593684","https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086398688","display_name":"Ralf Tautenhahn","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]},{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["SE","US"],"is_corresponding":false,"raw_author_name":"Ralf Tautenhahn","raw_affiliation_strings":["1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I100005738","https://openalex.org/I84218800","https://openalex.org/I161593684","https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041650906","display_name":"John T. Prince","orcid":"https://orcid.org/0000-0001-9820-4252"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["SE","US"],"is_corresponding":false,"raw_author_name":"John T. Prince","raw_affiliation_strings":["1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, University of California Davis, Davis, CA 95616, 2 Department of Computer Science, Brigham Young University, Provo, UT 84606, USA, 3 Department of Analytical Chemistry, Stockholm University, SE-106 91, Stockholm, Sweden, 4 Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84606, 5 Department of Chemistry, 6 Department of Molecular Biology and 7 Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I100005738","https://openalex.org/I84218800","https://openalex.org/I161593684","https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5007694645"],"corresponding_institution_ids":["https://openalex.org/I100005738","https://openalex.org/I123431417","https://openalex.org/I161593684","https://openalex.org/I84218800"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6732,"has_fulltext":false,"cited_by_count":49,"citation_normalized_percentile":{"value":0.84012807,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"30","issue":"18","first_page":"2636","last_page":"2643"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12073","display_name":"Isotope Analysis in Ecology","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8287907838821411},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6424035429954529},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5111628174781799},{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.49586400389671326},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4545229971408844},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.44299134612083435},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.42314815521240234},{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.42171043157577515},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3664380609989166},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21523553133010864},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1933135688304901},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12108981609344482}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8287907838821411},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6424035429954529},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5111628174781799},{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.49586400389671326},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4545229971408844},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.44299134612083435},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.42314815521240234},{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.42171043157577515},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3664380609989166},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21523553133010864},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1933135688304901},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12108981609344482},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007554","descriptor_name":"Isotopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007554","descriptor_name":"Isotopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007554","descriptor_name":"Isotopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008401","descriptor_name":"Gas Chromatography-Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008401","descriptor_name":"Gas Chromatography-Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008401","descriptor_name":"Gas Chromatography-Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu359","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu359","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2636/48929227/bioinformatics_30_18_2636.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24872423","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24872423","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu359","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu359","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2636/48929227/bioinformatics_30_18_2636.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"},{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309309","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47"},{"id":"https://openalex.org/F4320334763","display_name":"Leibniz-Gemeinschaft","ror":"https://ror.org/01n6r0e97"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131878480.pdf","grobid_xml":"https://content.openalex.org/works/W2131878480.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1587026990","https://openalex.org/W1964010911","https://openalex.org/W1986171504","https://openalex.org/W1989299822","https://openalex.org/W1990328488","https://openalex.org/W2014081012","https://openalex.org/W2025328928","https://openalex.org/W2032555174","https://openalex.org/W2037199116","https://openalex.org/W2048087720","https://openalex.org/W2050758433","https://openalex.org/W2073371472","https://openalex.org/W2080752012","https://openalex.org/W2115166033","https://openalex.org/W2116947789","https://openalex.org/W2126297361","https://openalex.org/W2128599926","https://openalex.org/W2130319566","https://openalex.org/W2139846209","https://openalex.org/W2144594011","https://openalex.org/W2145938889","https://openalex.org/W2160697532","https://openalex.org/W2168590651","https://openalex.org/W2491009754","https://openalex.org/W4230096730","https://openalex.org/W6681316295"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W1555873941","https://openalex.org/W2136711844","https://openalex.org/W2377966044","https://openalex.org/W2580435991","https://openalex.org/W2112504441","https://openalex.org/W2340712535","https://openalex.org/W2100619498","https://openalex.org/W2999448263","https://openalex.org/W2150153779"],"abstract_inverted_index":{"Massifquant":[0],"is":[1,26],"integrated":[2],"into":[3],"XCMS":[4],"with":[5],"GPL":[6],"license":[7],"\u2265":[8],"2.0":[9],"and":[10,24],"hosted":[11,27],"by":[12],"Bioconductor:":[13],"http://bioconductor.org.":[14],"Annotation":[15],"data":[16],"are":[17],"archived":[18],"at":[19,28],"http://hdl.lib.byu.edu/1877/3232.":[20],"Parameter":[21],"optimization":[22],"code":[23],"documentation":[25],"https://github.com/topherconley/optimize-it.":[29]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}