{"id":"https://openalex.org/W2132139217","doi":"https://doi.org/10.1093/bioinformatics/btu340","title":"Exploration and retrieval of whole-metagenome sequencing samples","display_name":"Exploration and retrieval of whole-metagenome sequencing samples","publication_year":2014,"publication_date":"2014-05-19","ids":{"openalex":"https://openalex.org/W2132139217","doi":"https://doi.org/10.1093/bioinformatics/btu340","mag":"2132139217","pmid":"https://pubmed.ncbi.nlm.nih.gov/24845653"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu340","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2471/48927030/bioinformatics_30_17_2471.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2471/48927030/bioinformatics_30_17_2471.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071193068","display_name":"Sohan Seth","orcid":"https://orcid.org/0000-0002-7464-4752"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Sohan Seth","raw_affiliation_strings":["1 \u00a01Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, Espoo, Finland, 2Genome-Scale Biology Program and Department of Medical Genetics, University of Helsinki, Helsinki, Finland, and 3Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, Espoo, Finland, 2Genome-Scale Biology Program and Department of Medical Genetics, University of Helsinki, Helsinki, Finland, and 3Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070318939","display_name":"Niko V\u00e4lim\u00e4ki","orcid":"https://orcid.org/0000-0001-9200-9560"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Niko V\u00e4lim\u00e4ki","raw_affiliation_strings":["1 \u00a01Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, Espoo, Finland, 2Genome-Scale Biology Program and Department of Medical Genetics, University of Helsinki, Helsinki, Finland, and 3Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, Espoo, Finland, 2Genome-Scale Biology Program and Department of Medical Genetics, University of Helsinki, Helsinki, Finland, and 3Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski","orcid":"https://orcid.org/0000-0003-1925-9154"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["1 \u00a01Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, Espoo, Finland, 2Genome-Scale Biology Program and Department of Medical Genetics, University of Helsinki, Helsinki, Finland, and 3Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, Espoo, Finland, 2Genome-Scale Biology Program and Department of Medical Genetics, University of Helsinki, Helsinki, Finland, and 3Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071329195","display_name":"Antti Honkela","orcid":"https://orcid.org/0000-0001-9193-8093"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Antti Honkela","raw_affiliation_strings":["1 \u00a01Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, Espoo, Finland, 2Genome-Scale Biology Program and Department of Medical Genetics, University of Helsinki, Helsinki, Finland, and 3Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, Espoo, Finland, 2Genome-Scale Biology Program and Department of Medical Genetics, University of Helsinki, Helsinki, Finland, and 3Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5071193068","https://openalex.org/A5071329195"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":2.6909,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.90797402,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"17","first_page":"2471","last_page":"2479"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.34599998593330383,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.34599998593330383,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.11500000208616257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.07699999958276749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9584041833877563},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.6590656042098999},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.6518716216087341},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5832555294036865},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5460108518600464},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5167562365531921},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5074240565299988},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4625849425792694},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.41432735323905945},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3966968059539795},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37667596340179443},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.231926828622818},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11108794808387756},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10724407434463501}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9584041833877563},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.6590656042098999},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.6518716216087341},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5832555294036865},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5460108518600464},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5167562365531921},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5074240565299988},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4625849425792694},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.41432735323905945},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3966968059539795},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37667596340179443},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.231926828622818},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11108794808387756},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10724407434463501},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu340","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2471/48927030/bioinformatics_30_17_2471.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24845653","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24845653","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4230234","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4230234","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu340","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2471/48927030/bioinformatics_30_17_2471.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G2538094955","display_name":null,"funder_award_id":"259440","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G3187257985","display_name":null,"funder_award_id":"#250345","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G4249896723","display_name":null,"funder_award_id":"251170","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G6321830016","display_name":null,"funder_award_id":"140057","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"}],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320321394","display_name":"Aalto-Yliopisto","ror":"https://ror.org/020hwjq30"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132139217.pdf","grobid_xml":"https://content.openalex.org/works/W2132139217.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W60013210","https://openalex.org/W1969128289","https://openalex.org/W1975970608","https://openalex.org/W1989348205","https://openalex.org/W1990190154","https://openalex.org/W1992715872","https://openalex.org/W1995393174","https://openalex.org/W2048818637","https://openalex.org/W2057215967","https://openalex.org/W2057253402","https://openalex.org/W2063053479","https://openalex.org/W2071841602","https://openalex.org/W2082650848","https://openalex.org/W2088209062","https://openalex.org/W2096128575","https://openalex.org/W2109196993","https://openalex.org/W2109391327","https://openalex.org/W2121171791","https://openalex.org/W2124637227","https://openalex.org/W2125826054","https://openalex.org/W2128769815","https://openalex.org/W2131026689","https://openalex.org/W2131659389","https://openalex.org/W2133856765","https://openalex.org/W2141911850","https://openalex.org/W2143469992","https://openalex.org/W2149202898","https://openalex.org/W2151372451","https://openalex.org/W2152246397","https://openalex.org/W2155368965","https://openalex.org/W2435251607","https://openalex.org/W2914037595","https://openalex.org/W2914081640","https://openalex.org/W4230380091","https://openalex.org/W6717827561"],"related_works":["https://openalex.org/W3043668926","https://openalex.org/W2741645994","https://openalex.org/W3036436206","https://openalex.org/W4238948313","https://openalex.org/W2391004329","https://openalex.org/W3111832393","https://openalex.org/W3139084279","https://openalex.org/W2601359818","https://openalex.org/W3198563773","https://openalex.org/W2769345399"],"abstract_inverted_index":{"MOTIVATION:":[0],"Over":[1],"the":[2,5,17,39,52,57,62,70,75,138,145,148,192,203],"recent":[3],"years,":[4],"field":[6],"of":[7,41,56,69,77,81,130,147,175,202],"whole-metagenome":[8,110],"shotgun":[9],"sequencing":[10,19,23,42,111],"has":[11,37],"witnessed":[12],"significant":[13,167],"growth":[14],"owing":[15],"to":[16,50,87,120,136],"high-throughput":[18],"technologies":[20],"that":[21],"allow":[22],"genomic":[24],"samples":[25,44,85,132,172],"cheaper,":[26],"faster":[27],"and":[28,54,66,106,133,181],"with":[29,177],"better":[30],"coverage":[31],"than":[32],"before.":[33],"This":[34],"technical":[35],"advancement":[36],"initiated":[38],"trend":[40],"multiple":[43],"in":[45,173,184],"different":[46,187],"conditions":[47],"or":[48],"environments":[49],"explore":[51],"similarities":[53],"dissimilarities":[55],"microbial":[58],"communities.":[59],"Examples":[60],"include":[61],"human":[63,71,153,160],"microbiome":[64,161],"project":[65,162],"various":[67],"studies":[68],"intestinal":[72],"tract.":[73],"With":[74],"availability":[76],"ever":[78],"larger":[79],"databases":[80],"such":[82],"measurements,":[83],"finding":[84],"similar":[86],"a":[88,94,103,115,128],"given":[89],"query":[90],"sample":[91,180],"is":[92,194,206],"becoming":[93],"central":[95],"operation.":[96],"RESULTS:":[97],"In":[98],"this":[99],"article,":[100],"we":[101],"develop":[102],"content-based":[104],"exploration":[105],"retrieval":[107],"method":[108,193],"for":[109,169],"samples.":[112,142,164],"We":[113,143,165],"apply":[114],"distributed":[116],"string":[117],"mining":[118],"framework":[119,205],"efficiently":[121],"extract":[122],"all":[123],"informative":[124],"sequence":[125],"k-mers":[126],"from":[127],"pool":[129],"metagenomic":[131,163],"use":[134],"them":[135],"measure":[137],"dissimilarity":[139],"between":[140,186],"two":[141,152],"evaluate":[144],"performance":[146],"proposed":[149],"approach":[150],"on":[151],"gut":[154,171],"metagenome":[155],"datasets":[156],"as":[157,159],"well":[158],"observe":[166],"enrichment":[168],"diseased":[170,179],"results":[174],"queries":[176],"another":[178],"high":[182],"accuracy":[183],"discriminating":[185],"body":[188],"sites":[189],"even":[190],"though":[191],"unsupervised.":[195],"AVAILABILITY":[196],"AND":[197],"IMPLEMENTATION:":[198],"A":[199],"software":[200],"implementation":[201],"DSM":[204],"available":[207,215],"at":[208,216],"https://github.com/HIITMetagenomics/dsm-framework.":[209],"SUPPLEMENTARY":[210],"INFORMATION:":[211],"Supplementary":[212],"data":[213],"are":[214],"Bioinformatics":[217],"online.":[218]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":5}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
