{"id":"https://openalex.org/W2129620046","doi":"https://doi.org/10.1093/bioinformatics/btu329","title":"SIBIS: a Bayesian model for inconsistent protein sequence estimation","display_name":"SIBIS: a Bayesian model for inconsistent protein sequence estimation","publication_year":2014,"publication_date":"2014-05-13","ids":{"openalex":"https://openalex.org/W2129620046","doi":"https://doi.org/10.1093/bioinformatics/btu329","mag":"2129620046","pmid":"https://pubmed.ncbi.nlm.nih.gov/24825613"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu329","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2432/48927415/bioinformatics_30_17_2432.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2432/48927415/bioinformatics_30_17_2432.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037903088","display_name":"Walyd Khenoussi","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Walyd Khenoussi","raw_affiliation_strings":["1Department of Computer Science, ICube, UMR 7357, University of Strasbourg, CNRS, F\u00e9d\u00e9ration de m\u00e9decine translationnelle, Strasbourg, F-67085, France"],"affiliations":[{"raw_affiliation_string":"1Department of Computer Science, ICube, UMR 7357, University of Strasbourg, CNRS, F\u00e9d\u00e9ration de m\u00e9decine translationnelle, Strasbourg, F-67085, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005777314","display_name":"Renaud Vanhoutr\u00e8ve","orcid":null},"institutions":[{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Renaud Vanhoutr\u00e8ve","raw_affiliation_strings":["1Department of Computer Science, ICube, UMR 7357, University of Strasbourg, CNRS, F\u00e9d\u00e9ration de m\u00e9decine translationnelle, Strasbourg, F-67085, France"],"affiliations":[{"raw_affiliation_string":"1Department of Computer Science, ICube, UMR 7357, University of Strasbourg, CNRS, F\u00e9d\u00e9ration de m\u00e9decine translationnelle, Strasbourg, F-67085, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025255544","display_name":"Olivier Poch","orcid":"https://orcid.org/0000-0002-7134-3217"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Poch","raw_affiliation_strings":["1Department of Computer Science, ICube, UMR 7357, University of Strasbourg, CNRS, F\u00e9d\u00e9ration de m\u00e9decine translationnelle, Strasbourg, F-67085, France"],"affiliations":[{"raw_affiliation_string":"1Department of Computer Science, ICube, UMR 7357, University of Strasbourg, CNRS, F\u00e9d\u00e9ration de m\u00e9decine translationnelle, Strasbourg, F-67085, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039921905","display_name":"Julie Thompson","orcid":"https://orcid.org/0000-0003-4893-3478"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie D. Thompson","raw_affiliation_strings":["1Department of Computer Science, ICube, UMR 7357, University of Strasbourg, CNRS, F\u00e9d\u00e9ration de m\u00e9decine translationnelle, Strasbourg, F-67085, France"],"affiliations":[{"raw_affiliation_string":"1Department of Computer Science, ICube, UMR 7357, University of Strasbourg, CNRS, F\u00e9d\u00e9ration de m\u00e9decine translationnelle, Strasbourg, F-67085, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5037903088"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I68947357"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2843,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.60629921,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"17","first_page":"2432","last_page":"2439"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7645803689956665},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.543998122215271},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5172024965286255},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5140606164932251},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.48428624868392944},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48219457268714905},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4815007448196411},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4773987829685211},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4410886764526367},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.4312082529067993},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4013729393482208},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37440818548202515},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36124616861343384},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29028230905532837},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2793588638305664},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.16578543186187744}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7645803689956665},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.543998122215271},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5172024965286255},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5140606164932251},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.48428624868392944},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48219457268714905},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4815007448196411},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4773987829685211},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4410886764526367},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.4312082529067993},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4013729393482208},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37440818548202515},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36124616861343384},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29028230905532837},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2793588638305664},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.16578543186187744},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu329","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2432/48927415/bioinformatics_30_17_2432.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24825613","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24825613","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu329","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2432/48927415/bioinformatics_30_17_2432.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129620046.pdf","grobid_xml":"https://content.openalex.org/works/W2129620046.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W21816278","https://openalex.org/W1564698930","https://openalex.org/W1574945381","https://openalex.org/W1964264557","https://openalex.org/W1969051510","https://openalex.org/W1969535465","https://openalex.org/W1981791726","https://openalex.org/W1986465861","https://openalex.org/W1990400148","https://openalex.org/W1992122623","https://openalex.org/W1996351562","https://openalex.org/W2009783955","https://openalex.org/W2018300877","https://openalex.org/W2021604692","https://openalex.org/W2030750720","https://openalex.org/W2031207772","https://openalex.org/W2052337103","https://openalex.org/W2066167693","https://openalex.org/W2068850418","https://openalex.org/W2090327616","https://openalex.org/W2092170757","https://openalex.org/W2092672051","https://openalex.org/W2094713937","https://openalex.org/W2099477841","https://openalex.org/W2105006906","https://openalex.org/W2106068402","https://openalex.org/W2106808634","https://openalex.org/W2107691364","https://openalex.org/W2120655738","https://openalex.org/W2120772351","https://openalex.org/W2122665495","https://openalex.org/W2125548284","https://openalex.org/W2130395351","https://openalex.org/W2136126520","https://openalex.org/W2136826997","https://openalex.org/W2137096454","https://openalex.org/W2140292630","https://openalex.org/W2143210482","https://openalex.org/W2148698435","https://openalex.org/W2158714788","https://openalex.org/W2163793049","https://openalex.org/W2600349519","https://openalex.org/W2601913882","https://openalex.org/W2605068739","https://openalex.org/W6678387949"],"related_works":["https://openalex.org/W2161189461","https://openalex.org/W2803517106","https://openalex.org/W4240507550","https://openalex.org/W1967142621","https://openalex.org/W1994428965","https://openalex.org/W2106830745","https://openalex.org/W2161062388","https://openalex.org/W4289123095","https://openalex.org/W2095400231","https://openalex.org/W1562094137"],"abstract_inverted_index":{"Source":[0],"code,":[1],"implemented":[2],"in":[3],"C":[4],"on":[5],"a":[6],"linux":[7],"system,":[8],"and":[9],"the":[10],"datasets":[11],"of":[12],"protein":[13],"sequences":[14],"are":[15],"freely":[16],"available":[17],"for":[18],"download":[19],"at":[20],"http://www.lbgi.fr/\u223cjulie/SIBIS.":[21]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
