{"id":"https://openalex.org/W2139995722","doi":"https://doi.org/10.1093/bioinformatics/btu310","title":"PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition","display_name":"PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition","publication_year":2014,"publication_date":"2014-05-13","ids":{"openalex":"https://openalex.org/W2139995722","doi":"https://doi.org/10.1093/bioinformatics/btu310","mag":"2139995722","pmid":"https://pubmed.ncbi.nlm.nih.gov/24825614"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2501/9963856/btu310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2501/9963856/btu310.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041658734","display_name":"Alex K. Lancaster","orcid":"https://orcid.org/0000-0002-0002-9263"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I1316535847","display_name":"Beth Israel Deaconess Medical Center","ror":"https://ror.org/04drvxt59","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316535847"]},{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex K. Lancaster","raw_affiliation_strings":["1 \u00a01Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, 2Department of Pathology, Beth Israel Deaconess Medical Center, 3Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA, 4Department of Biology, 5Howard Hughes Medical Institute, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139 and 6Department of Cell and Developmental Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, 2Department of Pathology, Beth Israel Deaconess Medical Center, 3Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA, 4Department of Biology, 5Howard Hughes Medical Institute, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139 and 6Department of Cell and Developmental Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I4210157710","https://openalex.org/I1316535847","https://openalex.org/I136199984","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090888671","display_name":"Andrew Nutter-Upham","orcid":null},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I1316535847","display_name":"Beth Israel Deaconess Medical Center","ror":"https://ror.org/04drvxt59","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316535847"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Nutter-Upham","raw_affiliation_strings":["1 \u00a01Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, 2Department of Pathology, Beth Israel Deaconess Medical Center, 3Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA, 4Department of Biology, 5Howard Hughes Medical Institute, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139 and 6Department of Cell and Developmental Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, 2Department of Pathology, Beth Israel Deaconess Medical Center, 3Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA, 4Department of Biology, 5Howard Hughes Medical Institute, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139 and 6Department of Cell and Developmental Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I4210157710","https://openalex.org/I1316535847","https://openalex.org/I136199984","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108447414","display_name":"Susan Lindquist","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I1316535847","display_name":"Beth Israel Deaconess Medical Center","ror":"https://ror.org/04drvxt59","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316535847"]},{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Susan Lindquist","raw_affiliation_strings":["1 \u00a01Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, 2Department of Pathology, Beth Israel Deaconess Medical Center, 3Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA, 4Department of Biology, 5Howard Hughes Medical Institute, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139 and 6Department of Cell and Developmental Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, 2Department of Pathology, Beth Israel Deaconess Medical Center, 3Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA, 4Department of Biology, 5Howard Hughes Medical Institute, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139 and 6Department of Cell and Developmental Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I4210157710","https://openalex.org/I1316535847","https://openalex.org/I136199984","https://openalex.org/I1344073410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085529697","display_name":"Oliver D. King","orcid":"https://orcid.org/0000-0002-9460-4491"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I1316535847","display_name":"Beth Israel Deaconess Medical Center","ror":"https://ror.org/04drvxt59","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316535847"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Oliver D. King","raw_affiliation_strings":["1 \u00a01Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, 2Department of Pathology, Beth Israel Deaconess Medical Center, 3Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA, 4Department of Biology, 5Howard Hughes Medical Institute, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139 and 6Department of Cell and Developmental Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, 2Department of Pathology, Beth Israel Deaconess Medical Center, 3Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA, 4Department of Biology, 5Howard Hughes Medical Institute, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139 and 6Department of Cell and Developmental Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I4210157710","https://openalex.org/I1316535847","https://openalex.org/I136199984","https://openalex.org/I1344073410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5085529697","https://openalex.org/A5108447414"],"corresponding_institution_ids":["https://openalex.org/I1316535847","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I166722992","https://openalex.org/I4210157710"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.7061,"has_fulltext":true,"cited_by_count":622,"citation_normalized_percentile":{"value":0.95856294,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"30","issue":"17","first_page":"2501","last_page":"2502"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11335","display_name":"Prion Diseases and Protein Misfolding","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11335","display_name":"Prion Diseases and Protein Misfolding","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13481","display_name":"Neurological diseases and metabolism","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6914326548576355},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6184595823287964},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5855914354324341},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5601283311843872},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.539351224899292},{"id":"https://openalex.org/keywords/composition","display_name":"Composition (language)","score":0.4831101894378662},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.47773951292037964},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.4688341021537781},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4318041205406189},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4212476909160614},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.41288936138153076},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3897261619567871},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3881230354309082},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23717078566551208},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2353513240814209},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.14547467231750488},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08223837614059448}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6914326548576355},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6184595823287964},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5855914354324341},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5601283311843872},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.539351224899292},{"id":"https://openalex.org/C40231798","wikidata":"https://www.wikidata.org/wiki/Q1333743","display_name":"Composition (language)","level":2,"score":0.4831101894378662},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.47773951292037964},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.4688341021537781},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4318041205406189},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4212476909160614},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.41288936138153076},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3897261619567871},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3881230354309082},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23717078566551208},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2353513240814209},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.14547467231750488},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08223837614059448},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011328","descriptor_name":"Prions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011328","descriptor_name":"Prions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011328","descriptor_name":"Prions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2501/9963856/btu310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24825614","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24825614","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4147883","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4147883","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2501/9963856/btu310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320312920","display_name":"G. Harold and Leila Y. Mathers Foundation","ror":"https://ror.org/02a7hjv13"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139995722.pdf","grobid_xml":"https://content.openalex.org/works/W2139995722.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1965286266","https://openalex.org/W1977034658","https://openalex.org/W1981681091","https://openalex.org/W2006952692","https://openalex.org/W2119651404","https://openalex.org/W2129602427","https://openalex.org/W2131965976","https://openalex.org/W2132121416"],"related_works":["https://openalex.org/W2033889310","https://openalex.org/W644889988","https://openalex.org/W2086577855","https://openalex.org/W2119018183","https://openalex.org/W1575418055","https://openalex.org/W2105855614","https://openalex.org/W2496732697","https://openalex.org/W189459719","https://openalex.org/W2909040123","https://openalex.org/W4234342421"],"abstract_inverted_index":{"http://plaac.wi.mit.edu/.":[0],"The":[1],"Ruby-based":[2],"web":[3],"framework":[4],"and":[5,34],"the":[6,22],"command-line":[7],"software":[8,26],"(implemented":[9],"in":[10,15],"Java,":[11],"with":[12],"visualization":[13],"routines":[14],"R)":[16],"are":[17],"available":[18],"at":[19],"http://github.com/whitehead/plaac":[20],"under":[21,30],"MIT":[23],"license.":[24],"All":[25],"can":[27],"be":[28],"run":[29],"OS":[31],"X,":[32],"Windows":[33],"Unix.":[35]},"counts_by_year":[{"year":2026,"cited_by_count":24},{"year":2025,"cited_by_count":66},{"year":2024,"cited_by_count":93},{"year":2023,"cited_by_count":94},{"year":2022,"cited_by_count":100},{"year":2021,"cited_by_count":80},{"year":2020,"cited_by_count":72},{"year":2019,"cited_by_count":40},{"year":2018,"cited_by_count":20},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":7}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
