{"id":"https://openalex.org/W2141122227","doi":"https://doi.org/10.1093/bioinformatics/btu302","title":"Accurate cell segmentation in microscopy images using membrane patterns","display_name":"Accurate cell segmentation in microscopy images using membrane patterns","publication_year":2014,"publication_date":"2014-05-21","ids":{"openalex":"https://openalex.org/W2141122227","doi":"https://doi.org/10.1093/bioinformatics/btu302","mag":"2141122227","pmid":"https://pubmed.ncbi.nlm.nih.gov/24849580"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu302","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2644/16918691/btu302.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2644/16918691/btu302.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008397964","display_name":"Sotiris Dimopoulos","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Sotiris Dimopoulos","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, 2 Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, 2 Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006876368","display_name":"Christian Mayer","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christian E. Mayer","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, 2 Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, 2 Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089249978","display_name":"Fabian Rudolf","orcid":"https://orcid.org/0000-0001-5264-333X"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Fabian Rudolf","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, 2 Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, 2 Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064223365","display_name":"Joerg Stelling","orcid":"https://orcid.org/0000-0002-1145-891X"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Joerg Stelling","raw_affiliation_strings":["1 Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, 2 Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, 2 Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008397964"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":14.5557,"has_fulltext":true,"cited_by_count":134,"citation_normalized_percentile":{"value":0.98857256,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"30","issue":"18","first_page":"2644","last_page":"2651"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7806189060211182},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6124466061592102},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5952565670013428},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5895652174949646},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5144803524017334},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4928779602050781},{"id":"https://openalex.org/keywords/scale-space-segmentation","display_name":"Scale-space segmentation","score":0.43151426315307617},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3906283974647522},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08726072311401367},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.08619895577430725}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7806189060211182},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6124466061592102},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5952565670013428},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5895652174949646},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5144803524017334},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4928779602050781},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.43151426315307617},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3906283974647522},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08726072311401367},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.08619895577430725}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btu302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu302","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2644/16918691/btu302.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24849580","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24849580","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:doc.rero.ch:296090","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/91209","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/91209","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 30 (18)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000091209","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000091209","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu302","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/18/2644/16918691/btu302.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1093674026","display_name":null,"funder_award_id":"agreement","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G162684670","display_name":"Kritisches Lexikon des Simonides aus Keos mit Digressionen \u00fcber linguistische, syntaktische und stilistische Besonderheiten.","funder_award_id":"20114","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G2579040122","display_name":null,"funder_award_id":"EU FP7","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2586514602","display_name":"Navigating through a postfeminist social media culture: Young females\u2019 experiences of health and wellbeing (MeStories)","funder_award_id":"201142","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3053670843","display_name":null,"funder_award_id":"201142","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5326042306","display_name":null,"funder_award_id":"SystemsX","funder_id":"https://openalex.org/F4320327577","funder_display_name":"SystemsX.ch"},{"id":"https://openalex.org/G7303098161","display_name":null,"funder_award_id":"SystemsX.ch","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320327577","display_name":"SystemsX.ch","ror":"https://ror.org/02s09gf16"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141122227.pdf","grobid_xml":"https://content.openalex.org/works/W2141122227.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W22745672","https://openalex.org/W1521920161","https://openalex.org/W1566967514","https://openalex.org/W1584826989","https://openalex.org/W1591540433","https://openalex.org/W1592027922","https://openalex.org/W1967182910","https://openalex.org/W1970480709","https://openalex.org/W1977757945","https://openalex.org/W2003609221","https://openalex.org/W2014829418","https://openalex.org/W2025818287","https://openalex.org/W2030887730","https://openalex.org/W2039808072","https://openalex.org/W2052636906","https://openalex.org/W2069981183","https://openalex.org/W2085966233","https://openalex.org/W2090440060","https://openalex.org/W2105365768","https://openalex.org/W2107554012","https://openalex.org/W2113137767","https://openalex.org/W2116040950","https://openalex.org/W2118101869","https://openalex.org/W2119300483","https://openalex.org/W2132822444","https://openalex.org/W2133059825","https://openalex.org/W2142054519","https://openalex.org/W2142332605","https://openalex.org/W2148743296","https://openalex.org/W2154917588","https://openalex.org/W2158557953","https://openalex.org/W2171330332","https://openalex.org/W2998023265","https://openalex.org/W3211330693","https://openalex.org/W6631251916","https://openalex.org/W6635518679","https://openalex.org/W6677911107","https://openalex.org/W6680096826"],"related_works":["https://openalex.org/W2185902295","https://openalex.org/W2103507220","https://openalex.org/W3144569342","https://openalex.org/W3011384228","https://openalex.org/W4313052709","https://openalex.org/W3199300986","https://openalex.org/W2945274617","https://openalex.org/W4298131179","https://openalex.org/W2375430703","https://openalex.org/W4323893507"],"abstract_inverted_index":{"Matlab":[0],"code":[1],"and":[2],"examples":[3],"are":[4],"available":[5],"at":[6],"http://www.csb.ethz.ch/tools/cellSegmPackage.zip.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":21},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
