{"id":"https://openalex.org/W2134053782","doi":"https://doi.org/10.1093/bioinformatics/btu295","title":"Accurate viral population assembly from ultra-deep sequencing data","display_name":"Accurate viral population assembly from ultra-deep sequencing data","publication_year":2014,"publication_date":"2014-06-11","ids":{"openalex":"https://openalex.org/W2134053782","doi":"https://doi.org/10.1093/bioinformatics/btu295","mag":"2134053782","pmid":"https://pubmed.ncbi.nlm.nih.gov/24932001"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu295","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/i329/48925366/bioinformatics_30_12_i329.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/i329/48925366/bioinformatics_30_12_i329.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017101305","display_name":"Serghei Mangul","orcid":"https://orcid.org/0000-0003-4770-3443"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Serghei Mangul","raw_affiliation_strings":["1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I181565077","https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037737527","display_name":"Nicholas C. Wu","orcid":"https://orcid.org/0000-0002-9078-6697"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas C. Wu","raw_affiliation_strings":["1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I181565077","https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029082038","display_name":"Nicholas Mancuso","orcid":"https://orcid.org/0000-0002-9352-5927"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Mancuso","raw_affiliation_strings":["1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I181565077","https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072751459","display_name":"Alex Zelikovsky","orcid":"https://orcid.org/0000-0003-4424-4691"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Zelikovsky","raw_affiliation_strings":["1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I181565077","https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029398617","display_name":"Ren Sun","orcid":"https://orcid.org/0000-0002-8628-7019"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ren Sun","raw_affiliation_strings":["1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I181565077","https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009368988","display_name":"Eleazar Eskin","orcid":"https://orcid.org/0000-0003-1149-4758"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eleazar Eskin","raw_affiliation_strings":["1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science Department, 2Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA, 3Department of Computer Science, Georgia State University, Atlanta, GA, 30303 and 4Department of Human Genetics, University of California, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I181565077","https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5017101305"],"corresponding_institution_ids":["https://openalex.org/I161318765","https://openalex.org/I181565077"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.6819,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.97973451,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"30","issue":"12","first_page":"i329","last_page":"i337"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/video-graphics-array","display_name":"Video Graphics Array","score":0.822604238986969},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.6975459456443787},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.597440242767334},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5807554125785828},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5668691396713257},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5456621646881104},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.542400062084198},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4977881908416748},{"id":"https://openalex.org/keywords/single-cell-sequencing","display_name":"Single cell sequencing","score":0.455293208360672},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.451058954000473},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4225800633430481},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2651742696762085},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.25196319818496704},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19571024179458618},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.1465023159980774},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.10944083333015442}],"concepts":[{"id":"https://openalex.org/C139983466","wikidata":"https://www.wikidata.org/wiki/Q17194","display_name":"Video Graphics Array","level":3,"score":0.822604238986969},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.6975459456443787},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.597440242767334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5807554125785828},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5668691396713257},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5456621646881104},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.542400062084198},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4977881908416748},{"id":"https://openalex.org/C174749747","wikidata":"https://www.wikidata.org/wiki/Q15917269","display_name":"Single cell sequencing","level":5,"score":0.455293208360672},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.451058954000473},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4225800633430481},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2651742696762085},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.25196319818496704},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19571024179458618},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.1465023159980774},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.10944083333015442},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006678","descriptor_name":"HIV","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006678","descriptor_name":"HIV","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006678","descriptor_name":"HIV","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006678","descriptor_name":"HIV","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btu295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu295","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/i329/48925366/bioinformatics_30_12_i329.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24932001","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24932001","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:scholarworks.gsu.edu:computer_science_facpub-1029","is_oa":true,"landing_page_url":"https://scholarworks.gsu.edu/computer_science_facpub/29","pdf_url":null,"source":{"id":"https://openalex.org/S4377196399","display_name":"ScholarWorks - Georgia State University (Georgia State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I181565077","host_organization_name":"Georgia State University","host_organization_lineage":["https://openalex.org/I181565077"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Science Faculty Publications","raw_type":"text"},{"id":"pmh:ark:/13030/qt3208c9x7","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt3208c9x7","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/3208c9x7","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics (Oxford, England), vol 30, iss 12","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4058922","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4058922","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu295","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/i329/48925366/bioinformatics_30_12_i329.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134053782.pdf","grobid_xml":"https://content.openalex.org/works/W2134053782.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1481334272","https://openalex.org/W1565354039","https://openalex.org/W1595409123","https://openalex.org/W1878374750","https://openalex.org/W1970931691","https://openalex.org/W1996824979","https://openalex.org/W2006046315","https://openalex.org/W2012069101","https://openalex.org/W2022986961","https://openalex.org/W2037809979","https://openalex.org/W2038602178","https://openalex.org/W2063797600","https://openalex.org/W2065256070","https://openalex.org/W2075162326","https://openalex.org/W2107688500","https://openalex.org/W2111283804","https://openalex.org/W2118526609","https://openalex.org/W2122767081","https://openalex.org/W2123009189","https://openalex.org/W2123716777","https://openalex.org/W2129933858","https://openalex.org/W2134007392","https://openalex.org/W2145109590","https://openalex.org/W2146351177","https://openalex.org/W2148686896","https://openalex.org/W2152241467","https://openalex.org/W2160609250","https://openalex.org/W2160969485","https://openalex.org/W2163326395","https://openalex.org/W2164762627","https://openalex.org/W2164971951","https://openalex.org/W2170765088","https://openalex.org/W2178838370","https://openalex.org/W2607539118","https://openalex.org/W2899702797","https://openalex.org/W4210318310","https://openalex.org/W4242287981"],"related_works":["https://openalex.org/W4210830088","https://openalex.org/W2767590279","https://openalex.org/W3011183076","https://openalex.org/W2794893153","https://openalex.org/W2721624558","https://openalex.org/W2079322808","https://openalex.org/W2216477337","https://openalex.org/W2772185703","https://openalex.org/W2584868213","https://openalex.org/W2795731640"],"abstract_inverted_index":{"Our":[0],"tool":[1],"VGA":[2],"is":[3],"freely":[4],"available":[5],"at":[6],"http://genetics.cs.ucla.edu/vga/":[7]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":7},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
