{"id":"https://openalex.org/W2004416209","doi":"https://doi.org/10.1093/bioinformatics/btu266","title":"ExSPAnder: a universal repeat resolver for DNA fragment assembly","display_name":"ExSPAnder: a universal repeat resolver for DNA fragment assembly","publication_year":2014,"publication_date":"2014-06-11","ids":{"openalex":"https://openalex.org/W2004416209","doi":"https://doi.org/10.1093/bioinformatics/btu266","mag":"2004416209","pmid":"https://pubmed.ncbi.nlm.nih.gov/24931996"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu266","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/i293/48926816/bioinformatics_30_12_i293.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/i293/48926816/bioinformatics_30_12_i293.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020845045","display_name":"Andrey D. Prjibelski","orcid":"https://orcid.org/0000-0003-2816-4608"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Andrey D. Prjibelski","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018788966","display_name":"Irina Vasilinetc","orcid":"https://orcid.org/0009-0004-3430-1263"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Irina Vasilinetc","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069872108","display_name":"Anton Bankevich","orcid":"https://orcid.org/0000-0003-0609-9542"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anton Bankevich","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030895995","display_name":"Alexey Gurevich","orcid":"https://orcid.org/0000-0002-5855-3519"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alexey Gurevich","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044150156","display_name":"Tatiana Krivosheeva","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tatiana Krivosheeva","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057619814","display_name":"Sergey Nurk","orcid":"https://orcid.org/0000-0003-1301-5749"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sergey Nurk","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015116910","display_name":"Son Pham","orcid":"https://orcid.org/0000-0001-6642-8796"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Son Pham","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082993256","display_name":"Anton Korobeynikov","orcid":"https://orcid.org/0000-0002-2937-9259"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anton Korobeynikov","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025927694","display_name":"Alla Lapidus","orcid":"https://orcid.org/0000-0003-0427-8731"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alla Lapidus","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027480961","display_name":"Pavel A. Pevzner","orcid":"https://orcid.org/0000-0002-0418-165X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pavel A. Pevzner","raw_affiliation_strings":["1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"1 Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia, 2Department of Mathematics and Mechanics, 3Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia and 4Department of Computer Science and Engineering, University of California, San Diego, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5020845045"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.6805,"has_fulltext":true,"cited_by_count":151,"citation_normalized_percentile":{"value":0.97595012,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"30","issue":"12","first_page":"i293","last_page":"i301"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.706708550453186},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6288065910339355},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5628526210784912},{"id":"https://openalex.org/keywords/resolver","display_name":"Resolver","score":0.5521966218948364},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5454164743423462},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.5172005891799927},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45446011424064636},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.41872337460517883},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3726503252983093},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3694714903831482},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2643481492996216},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2375403642654419},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.2149999737739563},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16740548610687256},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.06102725863456726}],"concepts":[{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.706708550453186},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6288065910339355},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5628526210784912},{"id":"https://openalex.org/C80156102","wikidata":"https://www.wikidata.org/wiki/Q788036","display_name":"Resolver","level":3,"score":0.5521966218948364},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5454164743423462},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.5172005891799927},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45446011424064636},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.41872337460517883},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3726503252983093},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3694714903831482},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2643481492996216},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2375403642654419},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.2149999737739563},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16740548610687256},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.06102725863456726},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C165005293","wikidata":"https://www.wikidata.org/wiki/Q1074500","display_name":"Chip","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000192","descriptor_name":"Actinomycetales","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000192","descriptor_name":"Actinomycetales","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000192","descriptor_name":"Actinomycetales","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu266","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/i293/48926816/bioinformatics_30_12_i293.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24931996","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24931996","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4058921","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4058921","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu266","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/i293/48926816/bioinformatics_30_12_i293.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2004416209.pdf","grobid_xml":"https://content.openalex.org/works/W2004416209.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W129849869","https://openalex.org/W1966822396","https://openalex.org/W1980557641","https://openalex.org/W2007924998","https://openalex.org/W2022986961","https://openalex.org/W2033292629","https://openalex.org/W2041391522","https://openalex.org/W2068342504","https://openalex.org/W2107772251","https://openalex.org/W2113287691","https://openalex.org/W2115127793","https://openalex.org/W2116279310","https://openalex.org/W2118612983","https://openalex.org/W2120902911","https://openalex.org/W2127067063","https://openalex.org/W2136651963","https://openalex.org/W2141920662","https://openalex.org/W2142749416","https://openalex.org/W2151794156","https://openalex.org/W2160756584","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2170551349","https://openalex.org/W2895878640"],"related_works":["https://openalex.org/W2337430195","https://openalex.org/W2752207905","https://openalex.org/W2394504874","https://openalex.org/W2276595233","https://openalex.org/W2734838959","https://openalex.org/W2047803783","https://openalex.org/W180085294","https://openalex.org/W4226176616","https://openalex.org/W1992134839","https://openalex.org/W2903885984"],"abstract_inverted_index":{"http://bioinf.spbau.ru/en/spades":[0]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":29},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":17}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
