{"id":"https://openalex.org/W2137700068","doi":"https://doi.org/10.1093/bioinformatics/btu210","title":"The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents","display_name":"The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents","publication_year":2014,"publication_date":"2014-04-22","ids":{"openalex":"https://openalex.org/W2137700068","doi":"https://doi.org/10.1093/bioinformatics/btu210","mag":"2137700068","pmid":"https://pubmed.ncbi.nlm.nih.gov/24755304"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu210","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/16/2367/48925164/bioinformatics_30_16_2367.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/16/2367/48925164/bioinformatics_30_16_2367.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066360902","display_name":"James P. Sluka","orcid":"https://orcid.org/0000-0002-5901-1404"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James P. Sluka","raw_affiliation_strings":["1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032411137","display_name":"Abbas Shirinifard","orcid":"https://orcid.org/0000-0002-4517-6080"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abbas Shirinifard","raw_affiliation_strings":["1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052354597","display_name":"Maciej Swat","orcid":"https://orcid.org/0000-0002-2429-4408"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maciej Swat","raw_affiliation_strings":["1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006313551","display_name":"Alin Cosmanescu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alin Cosmanescu","raw_affiliation_strings":["1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058904152","display_name":"Randy Heiland","orcid":"https://orcid.org/0000-0002-7440-2905"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Randy W. Heiland","raw_affiliation_strings":["1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032161283","display_name":"James A. Glazier","orcid":"https://orcid.org/0000-0003-3634-190X"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James A. Glazier","raw_affiliation_strings":["1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I4210151352"]},{"raw_affiliation_string":"Department of Physics, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5032161283","https://openalex.org/A5066360902"],"corresponding_institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I4210151352"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.3401,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.89152113,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"16","first_page":"2367","last_page":"2374"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5113999843597412,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5113999843597412,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.16910000145435333,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0340999998152256,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7657901048660278},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.749398946762085},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.604682981967926},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.580894947052002},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4744730293750763},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.43735551834106445},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.372078001499176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2782188653945923},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18541771173477173}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7657901048660278},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.749398946762085},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.604682981967926},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.580894947052002},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4744730293750763},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.43735551834106445},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.372078001499176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2782188653945923},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18541771173477173},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu210","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/16/2367/48925164/bioinformatics_30_16_2367.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24755304","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24755304","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4133580","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4133580","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu210","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/16/2367/48925164/bioinformatics_30_16_2367.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1570752703","display_name":null,"funder_award_id":"R835001","funder_id":"https://openalex.org/F4320306107","funder_display_name":"U.S. Environmental Protection Agency"},{"id":"https://openalex.org/G1948134935","display_name":null,"funder_award_id":"R01GM076692","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2218789016","display_name":null,"funder_award_id":"LM007885","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3138871659","display_name":null,"funder_award_id":"R01 GM76692","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5011633286","display_name":null,"funder_award_id":"P41 LM007885","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320306107","display_name":"U.S. Environmental Protection Agency","ror":"https://ror.org/03tns0030"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137700068.pdf","grobid_xml":"https://content.openalex.org/works/W2137700068.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W90118056","https://openalex.org/W115452890","https://openalex.org/W2003933044","https://openalex.org/W2024741923","https://openalex.org/W2044257395","https://openalex.org/W2070962276","https://openalex.org/W2096049852","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2104990432","https://openalex.org/W2113142309","https://openalex.org/W2119410416","https://openalex.org/W2122000245","https://openalex.org/W2123152121","https://openalex.org/W2124991490","https://openalex.org/W2131645519","https://openalex.org/W2133465414","https://openalex.org/W2136961946","https://openalex.org/W2145435867","https://openalex.org/W2146871965","https://openalex.org/W2163670493","https://openalex.org/W2216895152","https://openalex.org/W6679614950","https://openalex.org/W6680187105"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2985427592","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2101501829","https://openalex.org/W2400569965"],"abstract_inverted_index":{"MOTIVATION:":[0],"Currently,":[1],"there":[2],"are":[3],"no":[4],"ontologies":[5],"capable":[6],"of":[7,13,15,20,25,37,62,79,98,124,127,141,155,163,175],"describing":[8,30,92,105],"both":[9,176],"the":[10,18,31,73,93,116,150,153,156,168],"spatial":[11,50,94],"organization":[12],"groups":[14],"cells":[16,38,80,99],"and":[17,33,47,58,76,81,95,100,110,131,145,173,178,194],"behaviors":[19,36,97],"those":[21],"cells.":[22],"The":[23,83,160,184],"lack":[24],"a":[26,89,118,122,125,128,142],"formalized":[27],"method":[28],"for":[29,91,104],"spatiality":[32],"intrinsic":[34,74],"biological":[35,77,129,165],"makes":[39,152],"it":[40],"difficult":[41],"to":[42,71,135],"adequately":[43],"describe":[44,72],"cells,":[45],"tissues":[46],"organs":[48],"as":[49],"objects":[51],"in":[52,55,59,106,108,111],"living":[53],"tissues,":[54],"vitro":[56,109],"assays":[57],"computational":[60,147],"models":[61,177],"tissues.":[63,82],"RESULTS:":[64],"We":[65],"have":[66],"developed":[67,186],"an":[68],"OWL-2":[69],"ontology":[70],"physical":[75],"characteristics":[78],"Cell":[84],"Behavior":[85],"Ontology":[86],"(CBO)":[87],"provides":[88],"basis":[90],"observable":[96],"extracellular":[101],"components":[102],"suitable":[103],"vivo,":[107],"silico":[112],"multicell":[113,143],"systems.":[114],"Using":[115],"CBO,":[117,151,185],"modeler":[119],"can":[120],"create":[121],"meta-model":[123,134],"simulation":[126,138],"model":[130,144],"link":[132],"that":[133],"experiment":[136],"or":[137],"results.":[139],"Annotation":[140],"its":[146],"representation,":[148],"using":[149,187],"statement":[154],"underlying":[157],"biology":[158],"explicit.":[159],"formal":[161],"representation":[162],"such":[164],"abstraction":[166],"facilitates":[167],"validation,":[169],"falsification,":[170],"discovery,":[171],"sharing":[172],"reuse":[174],"experimental":[179],"data.":[180],"AVAILABILITY":[181],"AND":[182],"IMPLEMENTATION:":[183],"Prot\u00e9g\u00e9":[188],"4,":[189],"is":[190],"available":[191],"at":[192,195],"http://cbo.biocomplexity.indiana.edu/cbo/":[193],"BioPortal":[196],"(http://bioportal.bioontology.org/ontologies/CBO).":[197]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":4}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
