{"id":"https://openalex.org/W2163174206","doi":"https://doi.org/10.1093/bioinformatics/btu190","title":"Improving B-cell epitope prediction and its application to global antibody-antigen docking","display_name":"Improving B-cell epitope prediction and its application to global antibody-antigen docking","publication_year":2014,"publication_date":"2014-04-21","ids":{"openalex":"https://openalex.org/W2163174206","doi":"https://doi.org/10.1093/bioinformatics/btu190","mag":"2163174206","pmid":"https://pubmed.ncbi.nlm.nih.gov/24753488"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu190","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu190","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/16/2288/48925819/bioinformatics_30_16_2288.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/16/2288/48925819/bioinformatics_30_16_2288.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015244397","display_name":"Konrad Krawczyk","orcid":"https://orcid.org/0000-0003-0697-5522"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210123885","display_name":"Shanghai Institute of Applied Physics","ror":"https://ror.org/02w6gr951","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210123885"]},{"id":"https://openalex.org/I4210134054","display_name":"UCB Pharma (United Kingdom)","ror":"https://ror.org/03428qp74","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210134054","https://openalex.org/I85722119"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Konrad Krawczyk","raw_affiliation_strings":["1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China","institution_ids":["https://openalex.org/I4210123885","https://openalex.org/I4210134054","https://openalex.org/I19820366","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100359290","display_name":"Xiaofeng Liu","orcid":"https://orcid.org/0000-0002-5005-300X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210123885","display_name":"Shanghai Institute of Applied Physics","ror":"https://ror.org/02w6gr951","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210123885"]},{"id":"https://openalex.org/I4210134054","display_name":"UCB Pharma (United Kingdom)","ror":"https://ror.org/03428qp74","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210134054","https://openalex.org/I85722119"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Xiaofeng Liu","raw_affiliation_strings":["1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China","institution_ids":["https://openalex.org/I4210123885","https://openalex.org/I4210134054","https://openalex.org/I19820366","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027679218","display_name":"Terry Baker","orcid":"https://orcid.org/0000-0001-8365-084X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210123885","display_name":"Shanghai Institute of Applied Physics","ror":"https://ror.org/02w6gr951","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210123885"]},{"id":"https://openalex.org/I4210134054","display_name":"UCB Pharma (United Kingdom)","ror":"https://ror.org/03428qp74","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210134054","https://openalex.org/I85722119"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Terry Baker","raw_affiliation_strings":["1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China","institution_ids":["https://openalex.org/I4210123885","https://openalex.org/I4210134054","https://openalex.org/I19820366","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078567532","display_name":"Jiye Shi","orcid":"https://orcid.org/0000-0002-9628-8680"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210123885","display_name":"Shanghai Institute of Applied Physics","ror":"https://ror.org/02w6gr951","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210123885"]},{"id":"https://openalex.org/I4210134054","display_name":"UCB Pharma (United Kingdom)","ror":"https://ror.org/03428qp74","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210134054","https://openalex.org/I85722119"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Jiye Shi","raw_affiliation_strings":["1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China","institution_ids":["https://openalex.org/I4210123885","https://openalex.org/I4210134054","https://openalex.org/I19820366","https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015572211","display_name":"Charlotte M. Deane","orcid":"https://orcid.org/0000-0003-1388-2252"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210123885","display_name":"Shanghai Institute of Applied Physics","ror":"https://ror.org/02w6gr951","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210123885"]},{"id":"https://openalex.org/I4210134054","display_name":"UCB Pharma (United Kingdom)","ror":"https://ror.org/03428qp74","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210134054","https://openalex.org/I85722119"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Charlotte M. Deane","raw_affiliation_strings":["1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Statistics, Oxford University, OX1 3TG, Oxford, 2UCB Pharma, SL1 3WE Slough, UK and 3Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China","institution_ids":["https://openalex.org/I4210123885","https://openalex.org/I4210134054","https://openalex.org/I19820366","https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.8465,"has_fulltext":true,"cited_by_count":182,"citation_normalized_percentile":{"value":0.91407371,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"30","issue":"16","first_page":"2288","last_page":"2294"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.805400013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.805400013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.17389999330043793,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.005100000184029341,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8909284472465515},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7917079925537109},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.6544699668884277},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.6309589743614197},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6035407781600952},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5906475186347961},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.48551297187805176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28462570905685425},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.21723294258117676},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1297757923603058},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10000884532928467}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8909284472465515},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7917079925537109},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.6544699668884277},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.6309589743614197},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6035407781600952},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5906475186347961},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.48551297187805176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28462570905685425},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.21723294258117676},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1297757923603058},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10000884532928467},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu190","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu190","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/16/2288/48925819/bioinformatics_30_16_2288.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24753488","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24753488","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3177024","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4207425","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:087d0593-58a5-49d4-94d5-c06a322aeda2","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:087d0593-58a5-49d4-94d5-c06a322aeda2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PubMed (http://www.ncbi.nlm.nih.gov/pubmed/)","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu190","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu190","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/16/2288/48925819/bioinformatics_30_16_2288.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8699084357","display_name":null,"funder_award_id":"EP/K032402/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320337846","display_name":"UCB Pharma","ror":"https://ror.org/01n029866"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163174206.pdf","grobid_xml":"https://content.openalex.org/works/W2163174206.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1572242003","https://openalex.org/W1964152815","https://openalex.org/W1997851414","https://openalex.org/W2005140643","https://openalex.org/W2017956110","https://openalex.org/W2036808217","https://openalex.org/W2071200955","https://openalex.org/W2099367604","https://openalex.org/W2100316154","https://openalex.org/W2101636319","https://openalex.org/W2103053267","https://openalex.org/W2109553965","https://openalex.org/W2110505462","https://openalex.org/W2117012297","https://openalex.org/W2127155362","https://openalex.org/W2129414710","https://openalex.org/W2130479394","https://openalex.org/W2133712572","https://openalex.org/W2150537020","https://openalex.org/W2151445960","https://openalex.org/W2156125289","https://openalex.org/W2167833742","https://openalex.org/W2169092688","https://openalex.org/W2169760021","https://openalex.org/W2170703656","https://openalex.org/W4255798101","https://openalex.org/W6641420208","https://openalex.org/W6679573170"],"related_works":["https://openalex.org/W2130031978","https://openalex.org/W2090149287","https://openalex.org/W3043724143","https://openalex.org/W2336465572","https://openalex.org/W1963735212","https://openalex.org/W2399953650","https://openalex.org/W3197423116","https://openalex.org/W1966343877","https://openalex.org/W2423377342","https://openalex.org/W2347916519"],"abstract_inverted_index":{"MOTIVATION:":[0],"Antibodies":[1],"are":[2],"currently":[3],"the":[4,29,33,46,58,62,65,68,71,79,90,106,109,146,166,173],"most":[5],"important":[6],"class":[7],"of":[8,11,41,67,78,98,105,150,168],"biopharmaceuticals.":[9],"Development":[10],"such":[12,24],"antibody-based":[13],"drugs":[14],"depends":[15],"on":[16,61,92,102],"costly":[17],"and":[18,70,82,101,156],"time-consuming":[19],"screening":[20,34],"campaigns.":[21],"Computational":[22],"techniques":[23],"as":[25],"antibody-antigen":[26,80,85,99],"docking":[27,148,153],"hold":[28],"potential":[30],"to":[31,56,144],"facilitate":[32],"process":[35],"by":[36],"rapidly":[37],"providing":[38],"a":[39,53,83,94,114,135],"list":[40],"initial":[42],"poses":[43,170],"that":[44],"approximate":[45],"native":[47],"complex.":[48],"RESULTS:":[49],"We":[50,87,139],"have":[51,88],"developed":[52],"new":[54],"method":[55,74,91,121],"identify":[57],"epitope":[59,119,142],"region":[60],"antigen,":[63],"given":[64],"structures":[66,81],"antibody":[69],"antigen-EpiPred.":[72],"The":[73],"combines":[75],"conformational":[76],"matching":[77],"specific":[84],"score.":[86],"tested":[89],"both":[93,159],"large":[95],"non-redundant":[96,115],"set":[97],"complexes":[100],"homology":[103],"models":[104],"antibodies":[107],"and/or":[108],"unbound":[110],"antigen":[111],"structure.":[112],"On":[113],"test":[116],"set,":[117],"our":[118,141,162],"prediction":[120,164],"achieves":[122],"44%":[123],"recall":[124,130],"at":[125,131],"14%":[126,132],"precision":[127,133],"against":[128],"23%":[129],"for":[134],"background":[136],"random":[137],"distribution.":[138],"use":[140],"predictions":[143],"rescore":[145],"global":[147],"results":[149],"two":[151],"rigid-body":[152],"algorithms:":[154],"ZDOCK":[155],"ClusPro.":[157],"In":[158],"cases":[160],"including":[161],"epitope,":[163],"increases":[165],"number":[167],"near-native":[169],"found":[171],"among":[172],"top":[174],"decoys.":[175],"AVAILABILITY":[176],"AND":[177],"IMPLEMENTATION:":[178],"Our":[179],"software":[180],"is":[181],"available":[182],"from":[183],"http://www.stats.ox.ac.uk/research/proteins/resources.":[184]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
