{"id":"https://openalex.org/W2151651283","doi":"https://doi.org/10.1093/bioinformatics/btu185","title":"Rgb: a scriptable genome browser for R","display_name":"Rgb: a scriptable genome browser for R","publication_year":2014,"publication_date":"2014-04-09","ids":{"openalex":"https://openalex.org/W2151651283","doi":"https://doi.org/10.1093/bioinformatics/btu185","mag":"2151651283","pmid":"https://pubmed.ncbi.nlm.nih.gov/24753490"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu185","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu185","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2204/17144309/btu185.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2204/17144309/btu185.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071739469","display_name":"Sylvain Mareschal","orcid":"https://orcid.org/0000-0001-7492-7528"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I4210143695","display_name":"Institute for Research and Innovation in Biomedicine","ror":"https://ror.org/043v8pc22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210143695"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Sylvain Mareschal","raw_affiliation_strings":["1 Centre Henri Becquerel, INSERM UMR 918, 76038 Rouen Cedex 1, France, 2 Normandy University, University of Rouen, 76821 Mont-Saint-Aignan, France, 3 Institute for Research and Innovation in Biomedicine (IRIB), Haute-Normandie, 76183 Rouen Cedex, France and 4 LITIS, INSA EA 4108, 76801 Saint-Etienne-du-Rouvray, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre Henri Becquerel, INSERM UMR 918, 76038 Rouen Cedex 1, France, 2 Normandy University, University of Rouen, 76821 Mont-Saint-Aignan, France, 3 Institute for Research and Innovation in Biomedicine (IRIB), Haute-Normandie, 76183 Rouen Cedex, France and 4 LITIS, INSA EA 4108, 76801 Saint-Etienne-du-Rouvray, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210108118","https://openalex.org/I4210143695","https://openalex.org/I62396329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068062811","display_name":"Sydney Dubois","orcid":"https://orcid.org/0000-0002-0109-6820"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I4210143695","display_name":"Institute for Research and Innovation in Biomedicine","ror":"https://ror.org/043v8pc22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210143695"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sydney Dubois","raw_affiliation_strings":["1 Centre Henri Becquerel, INSERM UMR 918, 76038 Rouen Cedex 1, France, 2 Normandy University, University of Rouen, 76821 Mont-Saint-Aignan, France, 3 Institute for Research and Innovation in Biomedicine (IRIB), Haute-Normandie, 76183 Rouen Cedex, France and 4 LITIS, INSA EA 4108, 76801 Saint-Etienne-du-Rouvray, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre Henri Becquerel, INSERM UMR 918, 76038 Rouen Cedex 1, France, 2 Normandy University, University of Rouen, 76821 Mont-Saint-Aignan, France, 3 Institute for Research and Innovation in Biomedicine (IRIB), Haute-Normandie, 76183 Rouen Cedex, France and 4 LITIS, INSA EA 4108, 76801 Saint-Etienne-du-Rouvray, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210108118","https://openalex.org/I4210143695","https://openalex.org/I62396329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052475314","display_name":"Thierry Lecroq","orcid":"https://orcid.org/0000-0002-1900-3397"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I4210143695","display_name":"Institute for Research and Innovation in Biomedicine","ror":"https://ror.org/043v8pc22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210143695"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thierry Lecroq","raw_affiliation_strings":["1 Centre Henri Becquerel, INSERM UMR 918, 76038 Rouen Cedex 1, France, 2 Normandy University, University of Rouen, 76821 Mont-Saint-Aignan, France, 3 Institute for Research and Innovation in Biomedicine (IRIB), Haute-Normandie, 76183 Rouen Cedex, France and 4 LITIS, INSA EA 4108, 76801 Saint-Etienne-du-Rouvray, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre Henri Becquerel, INSERM UMR 918, 76038 Rouen Cedex 1, France, 2 Normandy University, University of Rouen, 76821 Mont-Saint-Aignan, France, 3 Institute for Research and Innovation in Biomedicine (IRIB), Haute-Normandie, 76183 Rouen Cedex, France and 4 LITIS, INSA EA 4108, 76801 Saint-Etienne-du-Rouvray, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210108118","https://openalex.org/I4210143695","https://openalex.org/I62396329"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082700087","display_name":"Fabrice Jardin","orcid":"https://orcid.org/0000-0002-6804-7943"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I4210143695","display_name":"Institute for Research and Innovation in Biomedicine","ror":"https://ror.org/043v8pc22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210143695"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fabrice Jardin","raw_affiliation_strings":["1 Centre Henri Becquerel, INSERM UMR 918, 76038 Rouen Cedex 1, France, 2 Normandy University, University of Rouen, 76821 Mont-Saint-Aignan, France, 3 Institute for Research and Innovation in Biomedicine (IRIB), Haute-Normandie, 76183 Rouen Cedex, France and 4 LITIS, INSA EA 4108, 76801 Saint-Etienne-du-Rouvray, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre Henri Becquerel, INSERM UMR 918, 76038 Rouen Cedex 1, France, 2 Normandy University, University of Rouen, 76821 Mont-Saint-Aignan, France, 3 Institute for Research and Innovation in Biomedicine (IRIB), Haute-Normandie, 76183 Rouen Cedex, France and 4 LITIS, INSA EA 4108, 76801 Saint-Etienne-du-Rouvray, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210108118","https://openalex.org/I4210143695","https://openalex.org/I62396329"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5071739469","https://openalex.org/A5082700087"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210108118","https://openalex.org/I4210143695","https://openalex.org/I62396329"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.39,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.61657501,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"30","issue":"15","first_page":"2204","last_page":"2205"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.579800009727478,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.579800009727478,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.08699999749660492,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.058400001376867294,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8938714861869812},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7992981672286987},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.7821825742721558},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.6896549463272095},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.6447471380233765},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.6021125316619873},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.565568208694458},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5011608600616455},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.4945501983165741},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4772729277610779},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4620946943759918},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4547431468963623},{"id":"https://openalex.org/keywords/mac-os","display_name":"Mac OS","score":0.43301069736480713},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.38322150707244873},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3802354037761688},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3781488835811615},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3027356266975403},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.1961384415626526},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.19506165385246277},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1603146493434906},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12296736240386963}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8938714861869812},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7992981672286987},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.7821825742721558},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.6896549463272095},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.6447471380233765},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.6021125316619873},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.565568208694458},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5011608600616455},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.4945501983165741},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4772729277610779},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4620946943759918},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4547431468963623},{"id":"https://openalex.org/C522133331","wikidata":"https://www.wikidata.org/wiki/Q43627","display_name":"Mac OS","level":3,"score":0.43301069736480713},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.38322150707244873},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3802354037761688},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3781488835811615},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3027356266975403},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.1961384415626526},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.19506165385246277},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1603146493434906},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12296736240386963},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu185","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu185","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2204/17144309/btu185.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24753490","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24753490","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu185","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu185","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2204/17144309/btu185.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320329938","display_name":"R\u00e9gion Normandie","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151651283.pdf","grobid_xml":"https://content.openalex.org/works/W2151651283.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W52410658","https://openalex.org/W1546952499","https://openalex.org/W2101735289","https://openalex.org/W2113959186","https://openalex.org/W2128016314","https://openalex.org/W2134672574","https://openalex.org/W2152239989","https://openalex.org/W2160697532","https://openalex.org/W6632813202"],"related_works":["https://openalex.org/W646563222","https://openalex.org/W2927886090","https://openalex.org/W2098339479","https://openalex.org/W2792006949","https://openalex.org/W2131192238","https://openalex.org/W2566205467","https://openalex.org/W3118004748","https://openalex.org/W2580435991","https://openalex.org/W2071531104","https://openalex.org/W2151651283"],"abstract_inverted_index":{"SUMMARY:":[0],"Thanks":[1],"to":[2,42,87],"its":[3],"free":[4],"licensing":[5],"and":[6,27,30,44,90,94,119,128,148],"the":[7,20,24,53,125,135],"development":[8],"of":[9,19,112],"initiatives":[10],"like":[11],"Bioconductor,":[12],"R":[13,49,117],"has":[14],"become":[15],"an":[16],"essential":[17],"part":[18],"bioinformatics":[21],"toolbox":[22],"in":[23,100],"past":[25],"years":[26],"is":[28],"more":[29,31],"confronted":[32],"with":[33,140],"genomically":[34],"located":[35],"data.":[36],"While":[37],"separate":[38],"solutions":[39,108],"are":[40,121,158],"available":[41,123,159],"manipulate":[43],"visualize":[45],"such":[46,60],"data,":[47],"no":[48],"package":[50,66],"currently":[51],"offers":[52],"efficiency":[54,96],"required":[55],"for":[56,78],"computationally":[57],"intensive":[58],"tasks":[59],"as":[61],"interactive":[62],"genome":[63,85],"browsing.":[64],"The":[65],"proposed":[67],"here":[68],"fulfills":[69],"this":[70],"specific":[71],"need,":[72],"providing":[73],"a":[74,82,101],"multilevel":[75],"interface":[76],"suitable":[77],"most":[79,141],"needs,":[80],"from":[81],"completely":[83],"interfaced":[84],"browser":[86],"low-level":[88],"classes":[89],"methods.":[91],"Its":[92],"time":[93],"memory":[95],"have":[97],"been":[98],"challenged":[99],"human":[102],"dataset,":[103],"where":[104],"it":[105],"outperformed":[106],"existing":[107],"by":[109],"several":[110],"orders":[111],"magnitude.":[113],"AVAILABILITY":[114],"AND":[115],"IMPLEMENTATION:":[116],"sources":[118],"packages":[120],"freely":[122],"at":[124,160],"CRAN":[126],"repository":[127],"dedicated":[129],"Web":[130],"site:":[131],"http://bioinformatics.ovsa.fr/Rgb.":[132],"Distributed":[133],"under":[134],"GPL":[136],"3":[137],"license,":[138],"compatible":[139],"operating":[142],"systems":[143],"(Windows,":[144],"Linux,":[145],"Mac":[146],"OS)":[147],"architectures.":[149],"CONTACT:":[150],"maressyl@gmail.com":[151],"or":[152],"fabrice.jardin@chb.unicancer.fr":[153],"SUPPLEMENTARY":[154],"INFORMATION:":[155],"Supplementary":[156],"data":[157],"Bioinformatics":[161],"online.":[162]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
