{"id":"https://openalex.org/W2167321137","doi":"https://doi.org/10.1093/bioinformatics/btu169","title":"PRADA: pipeline for RNA sequencing data analysis","display_name":"PRADA: pipeline for RNA sequencing data analysis","publication_year":2014,"publication_date":"2014-04-01","ids":{"openalex":"https://openalex.org/W2167321137","doi":"https://doi.org/10.1093/bioinformatics/btu169","mag":"2167321137","pmid":"https://pubmed.ncbi.nlm.nih.gov/24695405"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu169","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu169","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2224/48924825/bioinformatics_30_15_2224.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2224/48924825/bioinformatics_30_15_2224.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007118532","display_name":"Wandaliz Torres\u2010Garc\u00eda","orcid":"https://orcid.org/0000-0001-7729-5554"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Wandaliz Torres-Garc\u00eda","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005930092","display_name":"Siyuan Zheng","orcid":"https://orcid.org/0000-0002-1031-9424"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siyuan Zheng","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041619925","display_name":"Andrey Sivachenko","orcid":null},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrey Sivachenko","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061091881","display_name":"Rahulsimham Vegesna","orcid":"https://orcid.org/0000-0001-9829-9765"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rahulsimham Vegesna","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004949006","display_name":"Qianghu Wang","orcid":"https://orcid.org/0000-0002-3488-1059"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qianghu Wang","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100624642","display_name":"Rong Yao","orcid":"https://orcid.org/0000-0001-5617-5393"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rong Yao","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104110846","display_name":"Michael F. Berger","orcid":"https://orcid.org/0000-0002-0760-7177"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael F. Berger","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026079862","display_name":"John N. Weinstein","orcid":"https://orcid.org/0000-0001-9401-6908"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John N. Weinstein","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001392592","display_name":"Gad Getz","orcid":"https://orcid.org/0000-0002-0936-0753"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gad Getz","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040971821","display_name":"Roel G.W. Verhaak","orcid":"https://orcid.org/0000-0003-2773-0436"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roel G.W. Verhaak","raw_affiliation_strings":["1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, 2 The Eli and Edythe L. Broad Institute of Harvard University and MIT, Cambridge, MA 02142 and 3 Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10015, USA","institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I1343551460","https://openalex.org/I107606265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5007118532"],"corresponding_institution_ids":["https://openalex.org/I107606265","https://openalex.org/I1334819555","https://openalex.org/I1343551460"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":8.674,"has_fulltext":true,"cited_by_count":163,"citation_normalized_percentile":{"value":0.98487368,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"30","issue":"15","first_page":"2224","last_page":"2226"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6023352742195129},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5720360279083252},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47619426250457764},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.4447929859161377},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.43460190296173096},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4267139434814453},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4261776804924011},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.411590039730072},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3667731285095215},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21544712781906128},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11813753843307495},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10107642412185669},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.08532300591468811}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6023352742195129},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5720360279083252},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47619426250457764},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.4447929859161377},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.43460190296173096},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4267139434814453},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4261776804924011},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.411590039730072},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3667731285095215},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21544712781906128},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11813753843307495},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10107642412185669},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.08532300591468811},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu169","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu169","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2224/48924825/bioinformatics_30_15_2224.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24695405","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24695405","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1026.6874","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1026.6874","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2014/04/25/bioinformatics.btu169.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4103589","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4103589","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu169","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu169","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2224/48924825/bioinformatics_30_15_2224.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G2756220094","display_name":null,"funder_award_id":"14388","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3746653997","display_name":null,"funder_award_id":"CA143883","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6958325017","display_name":null,"funder_award_id":"CA143883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306152","display_name":"Michael and Susan Dell Foundation","ror":"https://ror.org/03hgmmt92"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167321137.pdf","grobid_xml":"https://content.openalex.org/works/W2167321137.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2005036868","https://openalex.org/W2029623390","https://openalex.org/W2047550265","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2119180969","https://openalex.org/W2122820790","https://openalex.org/W2139399606","https://openalex.org/W2160443244","https://openalex.org/W2161289668","https://openalex.org/W2166422007","https://openalex.org/W2335012284"],"related_works":["https://openalex.org/W2389214306","https://openalex.org/W2378076731","https://openalex.org/W2965083567","https://openalex.org/W4235240664","https://openalex.org/W4286888643","https://openalex.org/W1838576100","https://openalex.org/W2757182831","https://openalex.org/W3210795196","https://openalex.org/W2095886385","https://openalex.org/W2019887508"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":23},{"year":2017,"cited_by_count":20},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":6}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}