{"id":"https://openalex.org/W2136939537","doi":"https://doi.org/10.1093/bioinformatics/btu168","title":"<tt>VariantAnnotation</tt> : a <tt>Bioconductor</tt> package for exploration and annotation of genetic variants","display_name":"<tt>VariantAnnotation</tt> : a <tt>Bioconductor</tt> package for exploration and annotation of genetic variants","publication_year":2014,"publication_date":"2014-03-28","ids":{"openalex":"https://openalex.org/W2136939537","doi":"https://doi.org/10.1093/bioinformatics/btu168","mag":"2136939537","pmid":"https://pubmed.ncbi.nlm.nih.gov/24681907"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu168","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/14/2076/7251764/btu168.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/14/2076/7251764/btu168.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026029886","display_name":"Valerie Obenchain","orcid":null},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Valerie Obenchain","raw_affiliation_strings":["1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA","institution_ids":["https://openalex.org/I4210089486","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101458328","display_name":"Michael Lawrence","orcid":null},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Lawrence","raw_affiliation_strings":["1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA","institution_ids":["https://openalex.org/I4210089486","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081015175","display_name":"Vincent J. Carey","orcid":"https://orcid.org/0000-0003-4046-0063"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vincent Carey","raw_affiliation_strings":["1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA","institution_ids":["https://openalex.org/I4210089486","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081885552","display_name":"Stephanie M. Gogarten","orcid":"https://orcid.org/0000-0002-7231-9745"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephanie Gogarten","raw_affiliation_strings":["1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA","institution_ids":["https://openalex.org/I4210089486","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102926868","display_name":"Paul Shannon","orcid":"https://orcid.org/0009-0003-6641-3115"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Shannon","raw_affiliation_strings":["1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA","institution_ids":["https://openalex.org/I4210089486","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011002985","display_name":"Martin Morgan","orcid":"https://orcid.org/0000-0002-5874-8148"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Morgan","raw_affiliation_strings":["1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, 2 Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, 3 Brigham and Women\u2019s Hospital, Harvard Medical School, Boston, MA 02115 and 4 Department of Biostatistics, University of Washington, Seattle, WA 98195, USA","institution_ids":["https://openalex.org/I4210089486","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.12,"has_fulltext":true,"cited_by_count":389,"citation_normalized_percentile":{"value":0.97265438,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"30","issue":"14","first_page":"2076","last_page":"2078"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9920635223388672},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7304141521453857},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6860119104385376},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5138821601867676},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.4842038154602051},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.44276049733161926},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4145238697528839},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40546897053718567},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39018648862838745},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3478284776210785},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20233744382858276},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18722614645957947},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14761635661125183},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12060844898223877}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9920635223388672},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7304141521453857},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6860119104385376},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5138821601867676},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.4842038154602051},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.44276049733161926},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4145238697528839},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40546897053718567},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39018648862838745},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3478284776210785},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20233744382858276},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18722614645957947},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14761635661125183},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12060844898223877},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu168","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/14/2076/7251764/btu168.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24681907","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24681907","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4080743","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4080743","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu168","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/14/2076/7251764/btu168.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2136939537.pdf","grobid_xml":"https://content.openalex.org/works/W2136939537.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1973950074","https://openalex.org/W1984068087","https://openalex.org/W2072420737","https://openalex.org/W2096791516","https://openalex.org/W2104570606","https://openalex.org/W2119180969","https://openalex.org/W2131478115","https://openalex.org/W2142386149","https://openalex.org/W2149992227","https://openalex.org/W2155943701","https://openalex.org/W2160697532"],"related_works":["https://openalex.org/W43224192","https://openalex.org/W2982252354","https://openalex.org/W90653389","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2098339479"],"abstract_inverted_index":{"UNLABELLED:":[0],"VariantAnnotation":[1,28],"is":[2,56,87],"an":[3],"R":[4,34,59],"/":[5,35],"Bioconductor":[6,36,66],"package":[7,55,71],"for":[8,18,38,62,76],"the":[9,65,91],"exploration":[10],"and":[11,21,45,60,79],"annotation":[12],"of":[13],"genetic":[14],"variants.":[15],"Capabilities":[16],"exist":[17],"reading,":[19],"writing":[20],"filtering":[22],"variant":[23],"call":[24],"format":[25],"(VCF)":[26],"files.":[27],"allows":[29],"ready":[30],"access":[31],"to":[32],"additional":[33],"facilities":[37],"advanced":[39],"statistical":[40],"analysis,":[41],"data":[42],"transformation,":[43],"visualization":[44],"integration":[46],"with":[47],"diverse":[48],"genomic":[49],"resources.":[50],"AVAILABILITY":[51],"AND":[52],"IMPLEMENTATION:":[53],"This":[54],"implemented":[57],"in":[58,100],"available":[61,89],"download":[63],"at":[64],"Web":[67],"site":[68],"(http://bioconductor.org/packages/2.13/bioc/html/VariantAnnotation.html).":[69],"The":[70],"contains":[72],"extensive":[73],"help":[74],"pages":[75],"individual":[77],"functions":[78],"a":[80],"'vignette'":[81],"outlining":[82],"typical":[83],"work":[84],"flows;":[85],"it":[86],"made":[88],"under":[90],"open":[92],"source":[93],"'Artistic-2.0'":[94],"license.":[95],"Version":[96],"1.9.38":[97],"was":[98],"used":[99],"this":[101],"article.":[102]},"counts_by_year":[{"year":2026,"cited_by_count":16},{"year":2025,"cited_by_count":48},{"year":2024,"cited_by_count":28},{"year":2023,"cited_by_count":32},{"year":2022,"cited_by_count":40},{"year":2021,"cited_by_count":66},{"year":2020,"cited_by_count":38},{"year":2019,"cited_by_count":41},{"year":2018,"cited_by_count":36},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2016-06-24T00:00:00"}