{"id":"https://openalex.org/W2154579105","doi":"https://doi.org/10.1093/bioinformatics/btu158","title":"A new era in bioimage informatics","display_name":"A new era in bioimage informatics","publication_year":2014,"publication_date":"2014-04-21","ids":{"openalex":"https://openalex.org/W2154579105","doi":"https://doi.org/10.1093/bioinformatics/btu158","mag":"2154579105","pmid":"https://pubmed.ncbi.nlm.nih.gov/24753489"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu158","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1353/49859823/bioinformatics_30_10_1353.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1353/49859823/bioinformatics_30_10_1353.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061773929","display_name":"Robert F. Murphy","orcid":"https://orcid.org/0000-0003-0358-901X"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Robert F. Murphy","raw_affiliation_strings":["1 \u00a01Lane Center for Computational Biology, and Departments of Biological Sciences, Biomedical Engineering, and Machine Learning, Carnegie Mellon University and 2Faculty of Biology and Freiburg Institute for Advanced Studies, Albert Ludwig University of Freiburg"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Lane Center for Computational Biology, and Departments of Biological Sciences, Biomedical Engineering, and Machine Learning, Carnegie Mellon University and 2Faculty of Biology and Freiburg Institute for Advanced Studies, Albert Ludwig University of Freiburg","institution_ids":["https://openalex.org/I161046081","https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5061773929"],"corresponding_institution_ids":["https://openalex.org/I161046081","https://openalex.org/I74973139"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.328,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.9221371,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"30","issue":"10","first_page":"1353","last_page":"1353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.6231477856636047},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5917071104049683},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5301464796066284},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5239013433456421},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5032901167869568},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.4595121443271637},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.45130455493927},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19629967212677002},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.17351552844047546},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09851953387260437}],"concepts":[{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.6231477856636047},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5917071104049683},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5301464796066284},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5239013433456421},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5032901167869568},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.4595121443271637},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.45130455493927},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19629967212677002},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.17351552844047546},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09851953387260437},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu158","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1353/49859823/bioinformatics_30_10_1353.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24753489","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24753489","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:doi:10.1184/r1/6097121","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal contribution"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu158","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1353/49859823/bioinformatics_30_10_1353.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154579105.pdf","grobid_xml":"https://content.openalex.org/works/W2154579105.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1970480709","https://openalex.org/W1972392850","https://openalex.org/W1981314033","https://openalex.org/W1984643873","https://openalex.org/W2001135470","https://openalex.org/W2029575433","https://openalex.org/W2041322508","https://openalex.org/W2083750996","https://openalex.org/W2113057727","https://openalex.org/W2113846729","https://openalex.org/W2116927907","https://openalex.org/W2148512517","https://openalex.org/W2166545295","https://openalex.org/W2411670963"],"related_works":["https://openalex.org/W2397677514","https://openalex.org/W1495820741","https://openalex.org/W2914293784","https://openalex.org/W2990177913","https://openalex.org/W1451471413","https://openalex.org/W2138729887","https://openalex.org/W2401910071","https://openalex.org/W4323056170","https://openalex.org/W2126732312","https://openalex.org/W4302329558"],"abstract_inverted_index":{"Bioimage":[0],"informatics":[1],"arose":[2],"from":[3,88],"efforts":[4,90],"to":[5,57],"automate":[6],"pathology":[7],"and":[8,47,60,69,98],"cytology":[9],"tasks":[10],"(Eaves,":[11],"1967).":[12],"With":[13],"few":[14],"exceptions,":[15],"much":[16],"of":[17,38,102],"the":[18,77,95,108],"software":[19],"developed":[20],"during":[21],"these":[22,89],"early":[23],"days,":[24],"whether":[25],"in":[26,107],"academic":[27],"or":[28,54],"commercial":[29,85],"institutions,":[30],"was":[31,36,49],"proprietary.":[32],"The":[33,72],"primary":[34],"paradigm":[35],"production":[37],"hand-tuned":[39],"engineered":[40],"systems":[41,86],"that":[42],"could":[43],"reproduce":[44],"human":[45],"performance,":[46],"visualization":[48],"emphasized":[50],"for":[51,91],"interpreting":[52],"results":[53],"providing":[55],"assistance":[56],"clinicians":[58],"(Bartels":[59],"Wied,":[61],"1977;":[62],"Kaman,":[63],"et":[64],"al.,":[65],"1984;":[66],"van":[67],"Driel-Kulker":[68],"Ploem,":[70],"1982).":[71],"computational":[73],"resources":[74],"available":[75],"at":[76],"time":[78],"were":[79],"frequently":[80],"limiting.":[81],"Essentially,":[82],"no":[83],"successful":[84],"came":[87],"many":[92],"years,":[93],"until":[94],"US":[96],"Food":[97],"Drug":[99],"Administration\u2019s":[100],"approval":[101],"automated":[103],"Pap":[104],"smear":[105],"analysis":[106],"mid":[109],"1990s":[110],"(Patten":[111],"<em>et":[112],"al.</em>,":[113],"1996).":[114]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
