{"id":"https://openalex.org/W2153499010","doi":"https://doi.org/10.1093/bioinformatics/btu144","title":"GOssTo: a stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology","display_name":"GOssTo: a stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology","publication_year":2014,"publication_date":"2014-03-22","ids":{"openalex":"https://openalex.org/W2153499010","doi":"https://doi.org/10.1093/bioinformatics/btu144","mag":"2153499010","pmid":"https://pubmed.ncbi.nlm.nih.gov/24659104"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu144","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2235/48925746/bioinformatics_30_15_2235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2235/48925746/bioinformatics_30_15_2235.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035094021","display_name":"Horacio Caniza","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]}],"countries":["GB","IE","IT"],"is_corresponding":true,"raw_author_name":"Horacio Caniza","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000459620","display_name":"Alfonso E. Romero","orcid":"https://orcid.org/0000-0001-8855-5569"},"institutions":[{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["GB","IE","IT"],"is_corresponding":false,"raw_author_name":"Alfonso E. Romero","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061650623","display_name":"Samuel Heron","orcid":null},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]}],"countries":["GB","IE","IT"],"is_corresponding":false,"raw_author_name":"Samuel Heron","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090395493","display_name":"Haixuan Yang","orcid":"https://orcid.org/0000-0002-8724-4192"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]}],"countries":["GB","IE","IT"],"is_corresponding":false,"raw_author_name":"Haixuan Yang","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054730096","display_name":"Alessandra Devoto","orcid":"https://orcid.org/0000-0003-0401-383X"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]}],"countries":["GB","IE","IT"],"is_corresponding":false,"raw_author_name":"Alessandra Devoto","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075385368","display_name":"Marco Frasca","orcid":"https://orcid.org/0000-0002-4170-0922"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]}],"countries":["GB","IE","IT"],"is_corresponding":false,"raw_author_name":"Marco Frasca","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089929382","display_name":"Marco Mesiti","orcid":"https://orcid.org/0000-0001-5701-0080"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["GB","IE","IT"],"is_corresponding":false,"raw_author_name":"Marco Mesiti","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071444502","display_name":"Giorgio Valentini","orcid":"https://orcid.org/0000-0002-5694-3919"},"institutions":[{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]},{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["GB","IE","IT"],"is_corresponding":false,"raw_author_name":"Giorgio Valentini","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030607460","display_name":"Alberto Paccanaro","orcid":"https://orcid.org/0000-0001-8059-1346"},"institutions":[{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]},{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["GB","IE","IT"],"is_corresponding":false,"raw_author_name":"Alberto Paccanaro","raw_affiliation_strings":["1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Royal Holloway, University of London, Egham, TW200EX, UK, 2 School of Mathematics, Statistics & Applied Mathematics, National University of Ireland, Galway, 3 School of Biological Sciences, Royal Holloway, University of London, Egham, TW200EX, UK and 4 Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, via Comelico 39/41, 20135 Milano, Italy","institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5035094021"],"corresponding_institution_ids":["https://openalex.org/I184558857","https://openalex.org/I188760350","https://openalex.org/I189158943"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":1237,"currency":"EUR","value_usd":1334},"fwci":3.6957,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.94026227,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"30","issue":"15","first_page":"2235","last_page":"2236"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8086754083633423},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6244563460350037},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.6015883088111877},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5334618091583252},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5178366303443909},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5176571011543274},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5099893808364868},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5070362091064453},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.47198277711868286},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4214441776275635},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4205433428287506},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36672085523605347},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21423640847206116},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1974450647830963},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17354273796081543},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13576245307922363},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11449408531188965}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8086754083633423},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6244563460350037},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.6015883088111877},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5334618091583252},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5178366303443909},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5176571011543274},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5099893808364868},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5070362091064453},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.47198277711868286},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4214441776275635},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4205433428287506},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36672085523605347},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21423640847206116},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1974450647830963},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17354273796081543},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13576245307922363},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11449408531188965},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu144","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2235/48925746/bioinformatics_30_15_2235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24659104","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24659104","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:aran.library.nuigalway.ie/:10379/10676","is_oa":false,"landing_page_url":"http://hdl.handle.net/10379/10676","pdf_url":null,"source":{"id":"https://openalex.org/S4377196322","display_name":"ARAN (University of Galway Research Repository) (Ollscoil na Gaillimhe \u2013 University of Galway)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188760350","host_organization_name":"Ollscoil na Gaillimhe \u2013 University of Galway","host_organization_lineage":["https://openalex.org/I188760350"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:3072525","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4103586","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu144","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/15/2235/48925746/bioinformatics_30_15_2235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1683500639","display_name":null,"funder_award_id":"BB/K004131/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3571901485","display_name":null,"funder_award_id":"BB/F00964X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5515150595","display_name":"A GPU-based high performance system for discovering consensus domain architecture and functional annotation of protein families","funder_award_id":"BB/K004131/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153499010.pdf","grobid_xml":"https://content.openalex.org/works/W2153499010.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1647729745","https://openalex.org/W1659833910","https://openalex.org/W1856379730","https://openalex.org/W1980948656","https://openalex.org/W1993519105","https://openalex.org/W2098173334","https://openalex.org/W2100935296","https://openalex.org/W2103017472","https://openalex.org/W2110595429","https://openalex.org/W2132290594","https://openalex.org/W2165858555","https://openalex.org/W6636975626","https://openalex.org/W6639072066","https://openalex.org/W6675339850"],"related_works":["https://openalex.org/W2107952955","https://openalex.org/W2265558044","https://openalex.org/W2163095708","https://openalex.org/W1999493785","https://openalex.org/W2792440843","https://openalex.org/W2042301222","https://openalex.org/W2565684071","https://openalex.org/W75900285","https://openalex.org/W2231731582","https://openalex.org/W2060948468"],"abstract_inverted_index":{"GOssTo":[0],"is":[1],"available":[2],"both":[3],"as":[4,17],"a":[5,18,27],"stand-alone":[6,24],"application":[7,20,25],"running":[8],"on":[9],"GNU/Linux,":[10],"Windows":[11],"and":[12,16,29],"MacOS":[13],"from":[14,21],"www.paccanarolab.org/gossto":[15],"web":[19],"www.paccanarolab.org/gosstoweb.":[22],"The":[23],"features":[26],"simple":[28],"concise":[30],"command":[31],"line":[32],"interface":[33],"for":[34],"easy":[35],"integration":[36],"into":[37],"high-throughput":[38],"data":[39],"processing":[40],"pipelines.":[41]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":6}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
