{"id":"https://openalex.org/W2116121073","doi":"https://doi.org/10.1093/bioinformatics/btu137","title":"The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation","display_name":"The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation","publication_year":2014,"publication_date":"2014-03-10","ids":{"openalex":"https://openalex.org/W2116121073","doi":"https://doi.org/10.1093/bioinformatics/btu137","mag":"2116121073","pmid":"https://pubmed.ncbi.nlm.nih.gov/24618464"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/13/1920/48925161/bioinformatics_30_13_1920.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/13/1920/48925161/bioinformatics_30_13_1920.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109890619","display_name":"Jean-Pierre A. Kocher","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jean-Pierre A. Kocher","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042633311","display_name":"Daniel Quest","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel J. Quest","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049967604","display_name":"Patrick E. Duffy","orcid":"https://orcid.org/0000-0002-4483-5005"},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Duffy","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091714104","display_name":"Michael A. Meiners","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael A. Meiners","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004159840","display_name":"Raymond M. Moore","orcid":"https://orcid.org/0000-0003-4196-1804"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raymond M. Moore","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053681782","display_name":"David A. Rider","orcid":"https://orcid.org/0000-0002-1989-1873"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Rider","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041593601","display_name":"Asif Hossain","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Asif Hossain","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085507659","display_name":"Steven N. Hart","orcid":"https://orcid.org/0000-0001-7714-2734"},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven N. Hart","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027625472","display_name":"Valentin Dinu","orcid":"https://orcid.org/0000-0001-6192-7836"},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Valentin Dinu","raw_affiliation_strings":["1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA"],"affiliations":[{"raw_affiliation_string":"1 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research and 2 Department of Research IT, Mayo Clinic, Rochester, MN 55905, USA and 3 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I1330342723","https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5109890619"],"corresponding_institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210125099","https://openalex.org/I55732556"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.5624,"has_fulltext":true,"cited_by_count":95,"citation_normalized_percentile":{"value":0.90076362,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"30","issue":"13","first_page":"1920","last_page":"1922"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8760170340538025},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7975132465362549},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.7436547875404358},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5790126919746399},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.5462011098861694},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.4780900180339813},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.452004611492157},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4085846245288849},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3526386022567749},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2980087399482727},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.28470146656036377},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08937698602676392}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8760170340538025},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7975132465362549},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.7436547875404358},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5790126919746399},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.5462011098861694},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.4780900180339813},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.452004611492157},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4085846245288849},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3526386022567749},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2980087399482727},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.28470146656036377},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08937698602676392}],"mesh":[{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/13/1920/48925161/bioinformatics_30_13_1920.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24618464","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24618464","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3043730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4071205","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/13/1920/48925161/bioinformatics_30_13_1920.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116121073.pdf","grobid_xml":"https://content.openalex.org/works/W2116121073.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1984068087","https://openalex.org/W2048868499","https://openalex.org/W2106578986","https://openalex.org/W2113534011","https://openalex.org/W2128016314","https://openalex.org/W2142386149","https://openalex.org/W2149992227","https://openalex.org/W2165428180"],"related_works":["https://openalex.org/W2753132265","https://openalex.org/W4234766820","https://openalex.org/W4321232174","https://openalex.org/W2475789275","https://openalex.org/W2745097874","https://openalex.org/W2508823388","https://openalex.org/W2225951319","https://openalex.org/W645133142","https://openalex.org/W2992663142","https://openalex.org/W1538349749"],"abstract_inverted_index":{"The":[0,17,33],"package":[1],"is":[2],"implemented":[3],"in":[4,13],"Java":[5,14],"and":[6,15,27,37,41],"makes":[7],"use":[8],"of":[9],"external":[10],"tools":[11],"written":[12],"Perl.":[16],"toolkit":[18],"can":[19],"be":[20],"executed":[21],"on":[22],"Mac":[23],"OS":[24],"X":[25],"10.5":[26],"above":[28],"or":[29],"any":[30],"Linux":[31],"distribution.":[32],"BioR":[34],"application,":[35],"quickstart,":[36],"user":[38],"guide":[39],"documents":[40],"many":[42],"biological":[43],"examples":[44],"are":[45],"available":[46],"at":[47],"http://bioinformaticstools.mayo.edu.":[48]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":5}],"updated_date":"2026-03-29T08:15:47.926485","created_date":"2025-10-10T00:00:00"}
