{"id":"https://openalex.org/W2129090562","doi":"https://doi.org/10.1093/bioinformatics/btu113","title":"CanSNPer: a hierarchical genotype classifier of clonal pathogens","display_name":"CanSNPer: a hierarchical genotype classifier of clonal pathogens","publication_year":2014,"publication_date":"2014-02-25","ids":{"openalex":"https://openalex.org/W2129090562","doi":"https://doi.org/10.1093/bioinformatics/btu113","mag":"2129090562","pmid":"https://pubmed.ncbi.nlm.nih.gov/24574113"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1762/48927079/bioinformatics_30_12_1762.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1762/48927079/bioinformatics_30_12_1762.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001562555","display_name":"Adrian L\u00e4rkeryd","orcid":"https://orcid.org/0000-0003-1424-7840"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Adrian L\u00e4rkeryd","raw_affiliation_strings":["1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050698060","display_name":"Kerstin Myrtenn\u00e4s","orcid":"https://orcid.org/0000-0003-0627-8655"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Kerstin Myrtenn\u00e4s","raw_affiliation_strings":["1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069457732","display_name":"Edvin Karlsson","orcid":"https://orcid.org/0000-0002-1260-769X"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Edvin Karlsson","raw_affiliation_strings":["1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033301409","display_name":"Chinmay Kumar Dwibedi","orcid":null},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Chinmay Kumar Dwibedi","raw_affiliation_strings":["1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048753284","display_name":"Mats Forsman","orcid":"https://orcid.org/0000-0002-4466-5325"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Mats Forsman","raw_affiliation_strings":["1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103515943","display_name":"P\u00e4r Larsson","orcid":null},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"P\u00e4r Larsson","raw_affiliation_strings":["1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022926262","display_name":"Anders Johansson","orcid":"https://orcid.org/0000-0003-0548-5943"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Anders Johansson","raw_affiliation_strings":["1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034528790","display_name":"Andreas Sj\u00f6din","orcid":"https://orcid.org/0000-0001-5350-4219"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Andreas Sj\u00f6din","raw_affiliation_strings":["1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Clinical Microbiology, Ume\u00e5 University, 2Division of CBRN Security and Defence, FOI, Swedish Defence Research Agency, 3Department of Clinical Microbiology, The Laboratory for Molecular Infection Medicine Sweden (MIMS) and 4Department of Chemistry, Computational Life Science Cluster (CLiC), Ume\u00e5 University, Ume\u00e5, Sweden","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001562555"],"corresponding_institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I90267481"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2564,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.79351208,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"12","first_page":"1762","last_page":"1764"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.38359999656677246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.38359999656677246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.05220000073313713,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.031199999153614044,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6830370426177979},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5330573320388794},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5122575163841248},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4850389361381531},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4830946922302246},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.46731919050216675},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4650111794471741},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.45888882875442505},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.4191282391548157},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4172278940677643},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3876647651195526},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31004565954208374},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15661188960075378},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10266494750976562}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6830370426177979},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5330573320388794},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5122575163841248},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4850389361381531},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4830946922302246},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.46731919050216675},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4650111794471741},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.45888882875442505},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.4191282391548157},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4172278940677643},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3876647651195526},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31004565954208374},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15661188960075378},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10266494750976562}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058889","descriptor_name":"Molecular Typing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058889","descriptor_name":"Molecular Typing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058889","descriptor_name":"Molecular Typing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1762/48927079/bioinformatics_30_12_1762.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24574113","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24574113","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1762/48927079/bioinformatics_30_12_1762.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129090562.pdf","grobid_xml":"https://content.openalex.org/works/W2129090562.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1583240815","https://openalex.org/W1603185568","https://openalex.org/W1969321150","https://openalex.org/W1977633672","https://openalex.org/W1985626823","https://openalex.org/W1993038297","https://openalex.org/W1997982713","https://openalex.org/W2000677527","https://openalex.org/W2005212780","https://openalex.org/W2005340149","https://openalex.org/W2025611784","https://openalex.org/W2030642703","https://openalex.org/W2041257508","https://openalex.org/W2056020732","https://openalex.org/W2066084832","https://openalex.org/W2107828572","https://openalex.org/W2110476585","https://openalex.org/W2136482257","https://openalex.org/W2159568419","https://openalex.org/W2161645441","https://openalex.org/W2166544628","https://openalex.org/W2168253360"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2341492732","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W4287027380","https://openalex.org/W2789551765"],"abstract_inverted_index":{"SUMMARY:":[0],"Advances":[1],"in":[2,42],"typing":[3],"methodologies":[4],"have":[5],"recently":[6],"reformed":[7],"the":[8,50,84,128],"field":[9],"of":[10,13,18,25,45,80,86,112],"molecular":[11],"epidemiology":[12],"pathogens.":[14],"The":[15],"falling":[16],"cost":[17],"sequencing":[19,28],"technologies":[20],"is":[21,93],"creating":[22],"a":[23],"deluge":[24],"whole":[26],"genome":[27],"data":[29,70],"that":[30],"burdens":[31],"bioinformatics":[32],"resources":[33,92],"and":[34,63,100,123],"tool":[35],"development.":[36],"In":[37],"particular,":[38],"single":[39,115],"nucleotide":[40,116],"polymorphisms":[41],"core":[43],"genomes":[44],"pathogens":[46],"are":[47,60,130],"recognized":[48],"as":[49],"most":[51],"important":[52],"markers":[53],"for":[54,127],"inferring":[55],"genetic":[56],"relationships":[57],"because":[58],"they":[59],"evolutionarily":[61],"stable":[62],"amenable":[64],"to":[65,76],"high-throughput":[66],"detection":[67],"methods.":[68],"Sequence":[69],"will":[71],"provide":[72],"an":[73,98,108],"excellent":[74],"opportunity":[75],"extend":[77],"our":[78],"understanding":[79],"infectious":[81],"disease":[82],"when":[83],"challenge":[85],"extracting":[87],"knowledge":[88],"from":[89],"available":[90,132],"sequence":[91],"met.":[94],"Here,":[95],"we":[96],"present":[97],"efficient":[99],"user-friendly":[101],"genotype":[102],"classification":[103],"pipeline,":[104],"CanSNPer,":[105],"based":[106],"on":[107],"easily":[109],"expandable":[110],"database":[111],"predefined":[113],"canonical":[114],"polymorphisms.":[117],"AVAILABILITY":[118],"AND":[119],"IMPLEMENTATION:":[120],"All":[121],"documentation":[122],"Python-based":[124],"source":[125],"code":[126],"CanSNPer":[129],"freely":[131],"at":[133],"http://github.com/adrlar/CanSNPer.":[134]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-17T06:14:20.161405","created_date":"2025-10-10T00:00:00"}
