{"id":"https://openalex.org/W2108243628","doi":"https://doi.org/10.1093/bioinformatics/btu104","title":"Improved protein\u2013ligand binding affinity prediction by using a curvature-dependent surface-area model","display_name":"Improved protein\u2013ligand binding affinity prediction by using a curvature-dependent surface-area model","publication_year":2014,"publication_date":"2014-02-21","ids":{"openalex":"https://openalex.org/W2108243628","doi":"https://doi.org/10.1093/bioinformatics/btu104","mag":"2108243628","pmid":"https://pubmed.ncbi.nlm.nih.gov/24563257"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu104","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1674/48927235/bioinformatics_30_12_1674.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1674/48927235/bioinformatics_30_12_1674.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045938742","display_name":"Yang Cao","orcid":"https://orcid.org/0000-0002-1925-2123"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yang Cao","raw_affiliation_strings":["1Center for Growth, Metabolism and Aging, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China"],"affiliations":[{"raw_affiliation_string":"1Center for Growth, Metabolism and Aging, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100440403","display_name":"Lei Li","orcid":"https://orcid.org/0000-0003-2882-2447"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Li","raw_affiliation_strings":["1Center for Growth, Metabolism and Aging, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China"],"affiliations":[{"raw_affiliation_string":"1Center for Growth, Metabolism and Aging, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5045938742"],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.138,"has_fulltext":true,"cited_by_count":218,"citation_normalized_percentile":{"value":0.92342034,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"30","issue":"12","first_page":"1674","last_page":"1680"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7927274703979492},{"id":"https://openalex.org/keywords/curvature","display_name":"Curvature","score":0.6814751029014587},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.6538762450218201},{"id":"https://openalex.org/keywords/surface","display_name":"Surface (topology)","score":0.6091391444206238},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5903927087783813},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5294724702835083},{"id":"https://openalex.org/keywords/surface-protein","display_name":"Surface protein","score":0.5208359360694885},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5023903846740723},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.49080929160118103},{"id":"https://openalex.org/keywords/surface-tension","display_name":"Surface tension","score":0.47971051931381226},{"id":"https://openalex.org/keywords/planar","display_name":"Planar","score":0.41299593448638916},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.37907126545906067},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.34843987226486206},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.3369399309158325},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.30729955434799194},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.283186137676239},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2616005539894104},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.19828012585639954},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19021451473236084},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.16546201705932617},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12344515323638916},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09890088438987732}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7927274703979492},{"id":"https://openalex.org/C195065555","wikidata":"https://www.wikidata.org/wiki/Q214881","display_name":"Curvature","level":2,"score":0.6814751029014587},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.6538762450218201},{"id":"https://openalex.org/C2776799497","wikidata":"https://www.wikidata.org/wiki/Q484298","display_name":"Surface (topology)","level":2,"score":0.6091391444206238},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5903927087783813},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5294724702835083},{"id":"https://openalex.org/C3019232848","wikidata":"https://www.wikidata.org/wiki/Q29548","display_name":"Surface protein","level":2,"score":0.5208359360694885},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5023903846740723},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.49080929160118103},{"id":"https://openalex.org/C8892853","wikidata":"https://www.wikidata.org/wiki/Q170749","display_name":"Surface tension","level":2,"score":0.47971051931381226},{"id":"https://openalex.org/C134786449","wikidata":"https://www.wikidata.org/wiki/Q3391255","display_name":"Planar","level":2,"score":0.41299593448638916},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.37907126545906067},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.34843987226486206},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3369399309158325},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.30729955434799194},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.283186137676239},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2616005539894104},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.19828012585639954},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19021451473236084},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.16546201705932617},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12344515323638916},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09890088438987732},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu104","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1674/48927235/bioinformatics_30_12_1674.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24563257","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24563257","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu104","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1674/48927235/bioinformatics_30_12_1674.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108243628.pdf","grobid_xml":"https://content.openalex.org/works/W2108243628.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W125577685","https://openalex.org/W157808733","https://openalex.org/W1505394602","https://openalex.org/W1592950931","https://openalex.org/W1600692223","https://openalex.org/W1605578858","https://openalex.org/W1656114533","https://openalex.org/W1968656242","https://openalex.org/W1977467384","https://openalex.org/W1980285986","https://openalex.org/W1984021058","https://openalex.org/W1984903816","https://openalex.org/W1985204165","https://openalex.org/W1985588649","https://openalex.org/W1985953075","https://openalex.org/W1988111902","https://openalex.org/W1988437166","https://openalex.org/W1992210899","https://openalex.org/W1993046136","https://openalex.org/W1993403967","https://openalex.org/W1998568556","https://openalex.org/W1999394429","https://openalex.org/W2001900040","https://openalex.org/W2002802876","https://openalex.org/W2003356525","https://openalex.org/W2006230455","https://openalex.org/W2012084558","https://openalex.org/W2014704001","https://openalex.org/W2015517515","https://openalex.org/W2028629022","https://openalex.org/W2038542598","https://openalex.org/W2039545730","https://openalex.org/W2048631643","https://openalex.org/W2051163038","https://openalex.org/W2051844996","https://openalex.org/W2054794561","https://openalex.org/W2056179306","https://openalex.org/W2060468500","https://openalex.org/W2061079400","https://openalex.org/W2066515324","https://openalex.org/W2070206101","https://openalex.org/W2080333909","https://openalex.org/W2080653934","https://openalex.org/W2085315829","https://openalex.org/W2088558421","https://openalex.org/W2092285329","https://openalex.org/W2098312592","https://openalex.org/W2101547239","https://openalex.org/W2102377211","https://openalex.org/W2106315897","https://openalex.org/W2116716969","https://openalex.org/W2118587156","https://openalex.org/W2123471192","https://openalex.org/W2123603506","https://openalex.org/W2126539456","https://openalex.org/W2128332459","https://openalex.org/W2129157803","https://openalex.org/W2131754023","https://openalex.org/W2135882124","https://openalex.org/W2140574901","https://openalex.org/W2148512505","https://openalex.org/W2158360182","https://openalex.org/W2162027701","https://openalex.org/W2162166182","https://openalex.org/W2409690619","https://openalex.org/W4250362815","https://openalex.org/W6636007448","https://openalex.org/W6660445326","https://openalex.org/W6678591802"],"related_works":["https://openalex.org/W4244718299","https://openalex.org/W4206327962","https://openalex.org/W1999519644","https://openalex.org/W55883722","https://openalex.org/W2030728209","https://openalex.org/W2188500270","https://openalex.org/W2303858293","https://openalex.org/W2335800391","https://openalex.org/W2010009304","https://openalex.org/W2904897503"],"abstract_inverted_index":{"Cyscore":[0],"is":[1],"available":[2],"to":[3],"non-commercial":[4],"users":[5],"at":[6],"http://clab.labshare.cn/software/cyscore.html.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":32},{"year":2024,"cited_by_count":42},{"year":2023,"cited_by_count":38},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":3}],"updated_date":"2026-04-03T22:45:19.894376","created_date":"2025-10-10T00:00:00"}
