{"id":"https://openalex.org/W2170564629","doi":"https://doi.org/10.1093/bioinformatics/btu097","title":"ZDOCK server: interactive docking prediction of protein\u2013protein complexes and symmetric multimers","display_name":"ZDOCK server: interactive docking prediction of protein\u2013protein complexes and symmetric multimers","publication_year":2014,"publication_date":"2014-02-14","ids":{"openalex":"https://openalex.org/W2170564629","doi":"https://doi.org/10.1093/bioinformatics/btu097","mag":"2170564629","pmid":"https://pubmed.ncbi.nlm.nih.gov/24532726"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1771/48924135/bioinformatics_30_12_1771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1771/48924135/bioinformatics_30_12_1771.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046287489","display_name":"Brian G. Pierce","orcid":"https://orcid.org/0000-0003-4821-0368"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brian G. Pierce","raw_affiliation_strings":["1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA","institution_ids":["https://openalex.org/I111088046","https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059261585","display_name":"Kevin Wiehe","orcid":"https://orcid.org/0000-0001-9933-9618"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Wiehe","raw_affiliation_strings":["1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA","institution_ids":["https://openalex.org/I111088046","https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111519261","display_name":"Howook Hwang","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Howook Hwang","raw_affiliation_strings":["1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA","institution_ids":["https://openalex.org/I111088046","https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102957633","display_name":"Bong\u2010Hyun Kim","orcid":"https://orcid.org/0000-0002-1539-0203"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bong-Hyun Kim","raw_affiliation_strings":["1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA","institution_ids":["https://openalex.org/I111088046","https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065844672","display_name":"Thom Vreven","orcid":"https://orcid.org/0000-0003-3413-806X"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thom Vreven","raw_affiliation_strings":["1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA","institution_ids":["https://openalex.org/I111088046","https://openalex.org/I166722992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084369008","display_name":"Zhiping Weng","orcid":"https://orcid.org/0000-0002-3032-7966"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhiping Weng","raw_affiliation_strings":["1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605 and 2Bioinformatics Program, Boston University, 44 Cummington Mall, Boston, MA 02215 USA","institution_ids":["https://openalex.org/I111088046","https://openalex.org/I166722992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046287489","https://openalex.org/A5084369008"],"corresponding_institution_ids":["https://openalex.org/I111088046","https://openalex.org/I166722992"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":39.3822,"has_fulltext":true,"cited_by_count":1826,"citation_normalized_percentile":{"value":0.9992263,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"30","issue":"12","first_page":"1771","last_page":"1773"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.28949999809265137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.28949999809265137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.2224999964237213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.14149999618530273,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8328922986984253},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7411105036735535},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.525842010974884},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.5151351690292358},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5072169303894043},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4331507384777069},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3830772638320923},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3550272583961487},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24759778380393982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19936946034431458},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.15719875693321228},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08850392699241638}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8328922986984253},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7411105036735535},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.525842010974884},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.5151351690292358},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5072169303894043},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4331507384777069},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3830772638320923},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3550272583961487},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24759778380393982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19936946034431458},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.15719875693321228},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08850392699241638},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1771/48924135/bioinformatics_30_12_1771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24532726","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24532726","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3428515","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4058926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/12/1771/48924135/bioinformatics_30_12_1771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G4876751527","display_name":null,"funder_award_id":"R01 GM084884","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5250288683","display_name":null,"funder_award_id":"GM084884","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8258078846","display_name":null,"funder_award_id":"GM084884","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170564629.pdf","grobid_xml":"https://content.openalex.org/works/W2170564629.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1997865081","https://openalex.org/W2018664033","https://openalex.org/W2019691413","https://openalex.org/W2036481539","https://openalex.org/W2055905702","https://openalex.org/W2113885150","https://openalex.org/W2118795098","https://openalex.org/W2120190800","https://openalex.org/W2133842820","https://openalex.org/W2140522686","https://openalex.org/W2151460035","https://openalex.org/W2153255725","https://openalex.org/W2159820766","https://openalex.org/W2170421654","https://openalex.org/W2170441710","https://openalex.org/W2171778773","https://openalex.org/W2915344963"],"related_works":["https://openalex.org/W2996908194","https://openalex.org/W2585040066","https://openalex.org/W2162380182","https://openalex.org/W3005126098","https://openalex.org/W2157273785","https://openalex.org/W2064383522","https://openalex.org/W2942988621","https://openalex.org/W3187431608","https://openalex.org/W1974422922","https://openalex.org/W4309353019"],"abstract_inverted_index":{"SUMMARY:":[0],"Protein-protein":[1],"interactions":[2,27],"are":[3],"essential":[4],"to":[5,31,55,79,91,107,131],"cellular":[6],"and":[7,10,53,61,71,83,97,109,117,134],"immune":[8],"function,":[9],"in":[11,89],"many":[12],"cases,":[13],"because":[14],"of":[15,18,23,35,58,67,86,94,114],"the":[16,24,48,81,84,104],"absence":[17],"an":[19,33,69],"experimentally":[20],"determined":[21],"structure":[22],"complex,":[25],"these":[26],"must":[28],"be":[29],"modeled":[30],"obtain":[32],"understanding":[34],"their":[36,121],"molecular":[37],"basis.":[38],"We":[39],"present":[40],"a":[41,65],"user-friendly":[42],"protein":[43],"docking":[44,50,99],"server,":[45],"based":[46],"on":[47],"rigid-body":[49],"programs":[51],"ZDOCK":[52,126],"M-ZDOCK,":[54],"predict":[56],"structures":[57,96],"protein-protein":[59,115],"complexes":[60,116],"symmetric":[62,118],"multimers.":[63],"With":[64],"goal":[66],"providing":[68],"accessible":[70],"intuitive":[72],"interface,":[73],"we":[74],"provide":[75],"options":[76],"for":[77,120],"users":[78,136],"guide":[80],"scoring":[82],"selection":[85],"output":[87,98],"models,":[88],"addition":[90],"dynamic":[92],"visualization":[93],"input":[95],"models.":[100],"This":[101],"server":[102,127],"enables":[103],"research":[105],"community":[106],"easily":[108],"quickly":[110],"produce":[111],"structural":[112],"models":[113],"multimers":[119],"own":[122],"analysis.":[123],"AVAILABILITY:":[124],"The":[125],"is":[128,141],"freely":[129],"available":[130],"all":[132],"academic":[133],"non-profit":[135],"at:":[137],"http://zdock.umassmed.edu.":[138],"No":[139],"registration":[140],"required.":[142]},"counts_by_year":[{"year":2026,"cited_by_count":90},{"year":2025,"cited_by_count":170},{"year":2024,"cited_by_count":236},{"year":2023,"cited_by_count":180},{"year":2022,"cited_by_count":171},{"year":2021,"cited_by_count":212},{"year":2020,"cited_by_count":211},{"year":2019,"cited_by_count":137},{"year":2018,"cited_by_count":116},{"year":2017,"cited_by_count":108},{"year":2016,"cited_by_count":110},{"year":2015,"cited_by_count":68},{"year":2014,"cited_by_count":17}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}
