{"id":"https://openalex.org/W2101600343","doi":"https://doi.org/10.1093/bioinformatics/btu081","title":"The 3DGD: a database of genome 3D structure","display_name":"The 3DGD: a database of genome 3D structure","publication_year":2014,"publication_date":"2014-02-12","ids":{"openalex":"https://openalex.org/W2101600343","doi":"https://doi.org/10.1093/bioinformatics/btu081","mag":"2101600343","pmid":"https://pubmed.ncbi.nlm.nih.gov/24526713"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu081","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/11/1640/48927862/bioinformatics_30_11_1640.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/11/1640/48927862/bioinformatics_30_11_1640.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100323229","display_name":"Chao Li","orcid":"https://orcid.org/0000-0002-8062-4539"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Li","raw_affiliation_strings":["1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023461522","display_name":"Xiao Dong","orcid":"https://orcid.org/0000-0001-9987-5760"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Dong","raw_affiliation_strings":["1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110810433","display_name":"Haiwei Fan","orcid":"https://orcid.org/0000-0003-0080-2700"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haiwei Fan","raw_affiliation_strings":["1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088617689","display_name":"Chuan Wang","orcid":"https://orcid.org/0000-0002-1439-4798"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chuan Wang","raw_affiliation_strings":["1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076249394","display_name":"Guohui Ding","orcid":"https://orcid.org/0000-0002-2888-1335"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guohui Ding","raw_affiliation_strings":["1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I4210165038"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yixue Li","raw_affiliation_strings":["1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5008280608","https://openalex.org/A5076249394","https://openalex.org/A5088617689"],"corresponding_institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I4210165038"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.9544,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.86232188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"11","first_page":"1640","last_page":"1642"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7964221239089966},{"id":"https://openalex.org/keywords/chromosome-conformation-capture","display_name":"Chromosome conformation capture","score":0.7291807532310486},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6526105403900146},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6067508459091187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5398949384689331},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5367862582206726},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.48515209555625916},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4754776060581207},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3565111756324768},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3431495428085327},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29214999079704285},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2680577039718628},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.22809654474258423},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2068808674812317},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08221498131752014},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0719839334487915}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7964221239089966},{"id":"https://openalex.org/C93946551","wikidata":"https://www.wikidata.org/wiki/Q5113914","display_name":"Chromosome conformation capture","level":5,"score":0.7291807532310486},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6526105403900146},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6067508459091187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5398949384689331},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5367862582206726},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.48515209555625916},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4754776060581207},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3565111756324768},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3431495428085327},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29214999079704285},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2680577039718628},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.22809654474258423},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2068808674812317},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08221498131752014},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0719839334487915},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu081","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/11/1640/48927862/bioinformatics_30_11_1640.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24526713","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24526713","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu081","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/11/1640/48927862/bioinformatics_30_11_1640.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1003522617","display_name":null,"funder_award_id":"KSCX2-YW-R-190","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2036609123","display_name":null,"funder_award_id":"2009AA02Z304","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2738465767","display_name":null,"funder_award_id":"2011CB910204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3490831005","display_name":"\u771f\u6838\u6a21\u5f0f\u751f\u7269\u57fa\u56e0\u5173\u8054\u7f51\u7edc\u8fdb\u5316\u7814\u7a76","funder_award_id":"30900272","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3829800779","display_name":null,"funder_award_id":"2011KIP204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4104963257","display_name":null,"funder_award_id":"2008BAI64B01","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5329370537","display_name":null,"funder_award_id":"2010CB912702","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5976344460","display_name":null,"funder_award_id":"2011CBA00801","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6222600067","display_name":null,"funder_award_id":"2010CB529206","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8508431015","display_name":null,"funder_award_id":"31070752","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101600343.pdf","grobid_xml":"https://content.openalex.org/works/W2101600343.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1989036512","https://openalex.org/W2001576815","https://openalex.org/W2010334283","https://openalex.org/W2052436973","https://openalex.org/W2056482755","https://openalex.org/W2090037139","https://openalex.org/W2097798909","https://openalex.org/W2105778988","https://openalex.org/W2108615748","https://openalex.org/W2120718521","https://openalex.org/W2125397535","https://openalex.org/W2128106349","https://openalex.org/W2144072604","https://openalex.org/W2145619687","https://openalex.org/W2150455380","https://openalex.org/W2152605077"],"related_works":["https://openalex.org/W3195254751","https://openalex.org/W3116849561","https://openalex.org/W2136004413","https://openalex.org/W3180808842","https://openalex.org/W2111997778","https://openalex.org/W2793253652","https://openalex.org/W2898514070","https://openalex.org/W2043314233","https://openalex.org/W2065057682","https://openalex.org/W4210812535"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1,97],"studies":[2],"of":[3,61,69],"chromatin":[4,26,62,88],"3D":[5,63],"structure":[6,27,64,89],"help":[7],"us":[8],"to":[9,33],"understand":[10],"its":[11,91],"formation":[12],"and":[13,20,29,37,59,90,104],"function.":[14],"Techniques":[15],"combining":[16],"chromosome":[17],"conformation":[18],"capture":[19,25],"next":[21],"generation":[22],"sequencing":[23],"can":[24],"information":[28],"has":[30],"been":[31],"applied":[32],"several":[34],"different":[35],"species":[36],"cell":[38],"lines.":[39],"We":[40],"built":[41],"3DGD":[42,98],"(3D":[43],"Genome":[44],"Database),":[45],"a":[46],"database":[47],"that":[48],"currently":[49],"collected":[50],"Hi-C":[51],"data":[52,72,79,100],"on":[53],"four":[54],"species,":[55],"for":[56,84],"easy":[57],"accessing":[58],"visualization":[60],"data.":[65],"With":[66],"the":[67],"integration":[68],"other":[70],"omics":[71],"such":[73],"as":[74],"genome-wide":[75],"protein-DNA-binding":[76],"data,":[77],"this":[78],"source":[80],"would":[81],"be":[82],"useful":[83],"researchers":[85],"interested":[86],"in":[87],"biological":[92],"functions.":[93],"AVAILABILITY":[94],"AND":[95],"IMPLEMENTATION:":[96],"v1.1,":[99],"browser,":[101],"downloadable":[102],"files":[103],"documentation":[105],"are":[106],"available":[107],"at:":[108],"http://3dgd.biosino.org/.":[109]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":6}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
