{"id":"https://openalex.org/W2130496721","doi":"https://doi.org/10.1093/bioinformatics/btu050","title":"Bio Simulators: a web UI for biological simulation","display_name":"Bio Simulators: a web UI for biological simulation","publication_year":2014,"publication_date":"2014-01-27","ids":{"openalex":"https://openalex.org/W2130496721","doi":"https://doi.org/10.1093/bioinformatics/btu050","mag":"2130496721","pmid":"https://pubmed.ncbi.nlm.nih.gov/24470571"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1491/49860409/bioinformatics_30_10_1491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1491/49860409/bioinformatics_30_10_1491.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054933847","display_name":"Michael Pedersen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Michael Pedersen","raw_affiliation_strings":["1 Department of Plant Sciences, Cambridge University, Cambridge CB2 3EA, UK, 2School of Informatics, Edinburgh University, Edinburgh EH8 9AB, Scotland and 3Microsoft Research, Cambridge CB1 2FB, UK"],"affiliations":[{"raw_affiliation_string":"1 Department of Plant Sciences, Cambridge University, Cambridge CB2 3EA, UK, 2School of Informatics, Edinburgh University, Edinburgh EH8 9AB, Scotland and 3Microsoft Research, Cambridge CB1 2FB, UK","institution_ids":["https://openalex.org/I4210164937","https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032667158","display_name":"Nicolas Oury","orcid":null},"institutions":[{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Oury","raw_affiliation_strings":["1 Department of Plant Sciences, Cambridge University, Cambridge CB2 3EA, UK, 2School of Informatics, Edinburgh University, Edinburgh EH8 9AB, Scotland and 3Microsoft Research, Cambridge CB1 2FB, UK"],"affiliations":[{"raw_affiliation_string":"1 Department of Plant Sciences, Cambridge University, Cambridge CB2 3EA, UK, 2School of Informatics, Edinburgh University, Edinburgh EH8 9AB, Scotland and 3Microsoft Research, Cambridge CB1 2FB, UK","institution_ids":["https://openalex.org/I4210164937","https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055382780","display_name":"Colin Gravill","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Colin Gravill","raw_affiliation_strings":["1 Department of Plant Sciences, Cambridge University, Cambridge CB2 3EA, UK, 2School of Informatics, Edinburgh University, Edinburgh EH8 9AB, Scotland and 3Microsoft Research, Cambridge CB1 2FB, UK"],"affiliations":[{"raw_affiliation_string":"1 Department of Plant Sciences, Cambridge University, Cambridge CB2 3EA, UK, 2School of Informatics, Edinburgh University, Edinburgh EH8 9AB, Scotland and 3Microsoft Research, Cambridge CB1 2FB, UK","institution_ids":["https://openalex.org/I4210164937","https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016397813","display_name":"Andrew Phillips","orcid":"https://orcid.org/0000-0001-9725-1073"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Phillips","raw_affiliation_strings":["1 Department of Plant Sciences, Cambridge University, Cambridge CB2 3EA, UK, 2School of Informatics, Edinburgh University, Edinburgh EH8 9AB, Scotland and 3Microsoft Research, Cambridge CB1 2FB, UK"],"affiliations":[{"raw_affiliation_string":"1 Department of Plant Sciences, Cambridge University, Cambridge CB2 3EA, UK, 2School of Informatics, Edinburgh University, Edinburgh EH8 9AB, Scotland and 3Microsoft Research, Cambridge CB1 2FB, UK","institution_ids":["https://openalex.org/I4210164937","https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5054933847"],"corresponding_institution_ids":["https://openalex.org/I241749","https://openalex.org/I4210164937"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4278,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.64680619,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"30","issue":"10","first_page":"1491","last_page":"1492"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7647662162780762},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7567348480224609},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6239093542098999},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5985626578330994},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5679581165313721},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5230708718299866},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4760268032550812},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.4519502818584442},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4373186528682709},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.38269686698913574},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.32728311419487}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7647662162780762},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7567348480224609},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6239093542098999},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5985626578330994},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5679581165313721},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5230708718299866},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4760268032550812},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.4519502818584442},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4373186528682709},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.38269686698913574},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.32728311419487},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1491/49860409/bioinformatics_30_10_1491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24470571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24470571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.866.2813","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.866.2813","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2014/01/27/bioinformatics.btu050.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1491/49860409/bioinformatics_30_10_1491.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1361938442","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G1934935867","display_name":null,"funder_award_id":"Engineering and Physical Sciences R","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2790684302","display_name":"Towards Industrial Applications of Modular Languages for Biology","funder_award_id":"EP/H027955/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8899222346","display_name":null,"funder_award_id":"EP/H027955/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130496721.pdf","grobid_xml":"https://content.openalex.org/works/W2130496721.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W168236614","https://openalex.org/W1577189687","https://openalex.org/W2144063122","https://openalex.org/W2611943439"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W47352601","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W2981957539","https://openalex.org/W96612179","https://openalex.org/W631546281","https://openalex.org/W4213354039","https://openalex.org/W2266220644"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
