{"id":"https://openalex.org/W2126726407","doi":"https://doi.org/10.1093/bioinformatics/btu046","title":"Combinatorial therapy discovery using mixed integer linear programming","display_name":"Combinatorial therapy discovery using mixed integer linear programming","publication_year":2014,"publication_date":"2014-01-24","ids":{"openalex":"https://openalex.org/W2126726407","doi":"https://doi.org/10.1093/bioinformatics/btu046","mag":"2126726407","pmid":"https://pubmed.ncbi.nlm.nih.gov/24463180"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu046","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1456/49860343/bioinformatics_30_10_1456.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1456/49860343/bioinformatics_30_10_1456.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037376294","display_name":"Kaifang Pang","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210117334","display_name":"Neurological Research Institute","ror":"https://ror.org/02ea83075","country_code":"US","type":"other","lineage":["https://openalex.org/I4210117334"]},{"id":"https://openalex.org/I4210147586","display_name":"Texas Children's Hospital","ror":"https://ror.org/05cz92x43","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210147586"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kaifang Pang","raw_affiliation_strings":["1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210117334","https://openalex.org/I4210147586","https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110225982","display_name":"Ying-Wooi Wan","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210117334","display_name":"Neurological Research Institute","ror":"https://ror.org/02ea83075","country_code":"US","type":"other","lineage":["https://openalex.org/I4210117334"]},{"id":"https://openalex.org/I4210147586","display_name":"Texas Children's Hospital","ror":"https://ror.org/05cz92x43","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210147586"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying-Wooi Wan","raw_affiliation_strings":["1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210117334","https://openalex.org/I4210147586","https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048384448","display_name":"William T. Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210117334","display_name":"Neurological Research Institute","ror":"https://ror.org/02ea83075","country_code":"US","type":"other","lineage":["https://openalex.org/I4210117334"]},{"id":"https://openalex.org/I4210147586","display_name":"Texas Children's Hospital","ror":"https://ror.org/05cz92x43","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210147586"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William T. Choi","raw_affiliation_strings":["1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210117334","https://openalex.org/I4210147586","https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108664988","display_name":"Lawrence A. Donehower","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210117334","display_name":"Neurological Research Institute","ror":"https://ror.org/02ea83075","country_code":"US","type":"other","lineage":["https://openalex.org/I4210117334"]},{"id":"https://openalex.org/I4210147586","display_name":"Texas Children's Hospital","ror":"https://ror.org/05cz92x43","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210147586"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lawrence A. Donehower","raw_affiliation_strings":["1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210117334","https://openalex.org/I4210147586","https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052779340","display_name":"Jingchun Sun","orcid":"https://orcid.org/0000-0002-3284-7973"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210117334","display_name":"Neurological Research Institute","ror":"https://ror.org/02ea83075","country_code":"US","type":"other","lineage":["https://openalex.org/I4210117334"]},{"id":"https://openalex.org/I4210147586","display_name":"Texas Children's Hospital","ror":"https://ror.org/05cz92x43","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210147586"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingchun Sun","raw_affiliation_strings":["1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210117334","https://openalex.org/I4210147586","https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010926044","display_name":"Dhruv K. Pant","orcid":"https://orcid.org/0009-0000-7002-6730"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210117334","display_name":"Neurological Research Institute","ror":"https://ror.org/02ea83075","country_code":"US","type":"other","lineage":["https://openalex.org/I4210117334"]},{"id":"https://openalex.org/I4210147586","display_name":"Texas Children's Hospital","ror":"https://ror.org/05cz92x43","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210147586"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dhruv Pant","raw_affiliation_strings":["1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210117334","https://openalex.org/I4210147586","https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004947640","display_name":"Zhandong Liu","orcid":"https://orcid.org/0000-0002-7608-0831"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210117334","display_name":"Neurological Research Institute","ror":"https://ror.org/02ea83075","country_code":"US","type":"other","lineage":["https://openalex.org/I4210117334"]},{"id":"https://openalex.org/I4210147586","display_name":"Texas Children's Hospital","ror":"https://ror.org/05cz92x43","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210147586"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhandong Liu","raw_affiliation_strings":["1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational and Integrative Biomedical Research Center, Baylor College of Medicine, 2Jan and Dan Duncan Neurological Research Institute, Texas Children\u2019s Hospital, 3Department of Pediatrics-Neurology, 4Department of Obstetrics and Gynaecology, 5Department of Molecular Virology and Microbiology, Baylor College of Medicine, 6School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA, and 7Department of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210117334","https://openalex.org/I4210147586","https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5004947640"],"corresponding_institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210117334","https://openalex.org/I4210147586","https://openalex.org/I919571938"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.0959,"has_fulltext":false,"cited_by_count":93,"citation_normalized_percentile":{"value":0.87696314,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"30","issue":"10","first_page":"1456","last_page":"1463"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.29429998993873596,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.29429998993873596,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.15070000290870667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12023","display_name":"Cholinesterase and Neurodegenerative Diseases","score":0.045499999076128006,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.7190889716148376},{"id":"https://openalex.org/keywords/set-cover-problem","display_name":"Set cover problem","score":0.6406733989715576},{"id":"https://openalex.org/keywords/integer-programming","display_name":"Integer programming","score":0.5815444588661194},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.574792206287384},{"id":"https://openalex.org/keywords/cover","display_name":"Cover (algebra)","score":0.5463791489601135},{"id":"https://openalex.org/keywords/linear-programming","display_name":"Linear programming","score":0.4998905658721924},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.41393330693244934},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38784223794937134},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27579838037490845},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10394987463951111}],"concepts":[{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.7190889716148376},{"id":"https://openalex.org/C100808899","wikidata":"https://www.wikidata.org/wiki/Q1192100","display_name":"Set cover problem","level":3,"score":0.6406733989715576},{"id":"https://openalex.org/C56086750","wikidata":"https://www.wikidata.org/wiki/Q6042592","display_name":"Integer programming","level":2,"score":0.5815444588661194},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.574792206287384},{"id":"https://openalex.org/C2780428219","wikidata":"https://www.wikidata.org/wiki/Q16952335","display_name":"Cover (algebra)","level":2,"score":0.5463791489601135},{"id":"https://openalex.org/C41045048","wikidata":"https://www.wikidata.org/wiki/Q202843","display_name":"Linear programming","level":2,"score":0.4998905658721924},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.41393330693244934},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38784223794937134},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27579838037490845},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10394987463951111},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004338","descriptor_name":"Drug Combinations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004338","descriptor_name":"Drug Combinations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004338","descriptor_name":"Drug Combinations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011382","descriptor_name":"Programming, Linear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011382","descriptor_name":"Programming, Linear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011382","descriptor_name":"Programming, Linear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu046","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1456/49860343/bioinformatics_30_10_1456.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24463180","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24463180","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3398547","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4016706","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu046","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/10/1456/49860343/bioinformatics_30_10_1456.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G432120463","display_name":null,"funder_award_id":"DP5 OD009134","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8537781359","display_name":null,"funder_award_id":"5DP5OD009134","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2126726407.pdf"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W1544009106","https://openalex.org/W1546001247","https://openalex.org/W1972821149","https://openalex.org/W1975963121","https://openalex.org/W1981873012","https://openalex.org/W1990841485","https://openalex.org/W2002544582","https://openalex.org/W2003984225","https://openalex.org/W2010457001","https://openalex.org/W2017562064","https://openalex.org/W2024770800","https://openalex.org/W2026120317","https://openalex.org/W2027155618","https://openalex.org/W2033591223","https://openalex.org/W2037394376","https://openalex.org/W2044025814","https://openalex.org/W2049346806","https://openalex.org/W2049451636","https://openalex.org/W2049727785","https://openalex.org/W2050343160","https://openalex.org/W2061136308","https://openalex.org/W2065030691","https://openalex.org/W2065487600","https://openalex.org/W2068320203","https://openalex.org/W2078978810","https://openalex.org/W2079701251","https://openalex.org/W2082917156","https://openalex.org/W2087861588","https://openalex.org/W2095011117","https://openalex.org/W2098270787","https://openalex.org/W2109322740","https://openalex.org/W2113055150","https://openalex.org/W2115147179","https://openalex.org/W2123340910","https://openalex.org/W2124307069","https://openalex.org/W2124696614","https://openalex.org/W2126095744","https://openalex.org/W2126783165","https://openalex.org/W2130410032","https://openalex.org/W2137052779","https://openalex.org/W2138427043","https://openalex.org/W2156761481","https://openalex.org/W2158789685","https://openalex.org/W2159675211","https://openalex.org/W2160513282","https://openalex.org/W2165863045","https://openalex.org/W2168258971","https://openalex.org/W2169052701","https://openalex.org/W2229060366","https://openalex.org/W2404828650","https://openalex.org/W2409254576","https://openalex.org/W2545004184","https://openalex.org/W3101756747","https://openalex.org/W6712942060","https://openalex.org/W6714239313"],"related_works":["https://openalex.org/W3145090562","https://openalex.org/W2951839510","https://openalex.org/W2321338106","https://openalex.org/W3006241023","https://openalex.org/W4310470542","https://openalex.org/W1486656814","https://openalex.org/W3172764889","https://openalex.org/W1982719520","https://openalex.org/W3118404067","https://openalex.org/W2608348709"],"abstract_inverted_index":{"MOTIVATION:":[0],"Combinatorial":[1],"therapies":[2],"play":[3],"increasingly":[4],"important":[5],"roles":[6],"in":[7,20],"combating":[8],"complex":[9],"diseases.":[10],"Owing":[11],"to":[12,31,67,153,184,187],"the":[13,33,69,102,105,110,114,123,129,148],"huge":[14],"cost":[15],"associated":[16],"with":[17,147],"experimental":[18],"methods":[19],"identifying":[21],"optimal":[22,70,191],"drug":[23,60,164,170,192],"combinations,":[24,165],"computational":[25,41],"approaches":[26,42],"can":[27],"provide":[28],"a":[29,53,91,97,119,139,181,195],"guide":[30],"limit":[32],"search":[34,146,189],"space":[35],"and":[36,49,84,108,136],"reduce":[37],"cost.":[38],"However,":[39],"few":[40],"have":[43],"been":[44],"developed":[45,180],"for":[46,59,190,205],"this":[47],"purpose,":[48],"thus":[50],"there":[51],"is":[52,202],"great":[54],"need":[55],"of":[56],"new":[57],"algorithms":[58,159],"combination":[61],"prediction.":[62],"RESULTS:":[63],"Here":[64],"we":[65,179],"proposed":[66],"formulate":[68],"combinatorial":[71],"therapy":[72],"problem":[73],"into":[74],"two":[75],"complementary":[76],"mathematical":[77],"algorithms,":[78],"Balanced":[79],"Target":[80],"Set":[81,87],"Cover":[82,88],"(BTSC)":[83],"Minimum":[85],"Off-Target":[86],"(MOTSC).":[89],"Given":[90],"disease":[92,106,124,155],"gene":[93,125,156,197],"set,":[94],"BTSC":[95,135],"seeks":[96,118],"balanced":[98],"solution":[99],"that":[100,172],"maximizes":[101],"coverage":[103,121],"on":[104,122],"genes":[107],"minimizes":[109],"off-target":[111,130],"hits":[112],"at":[113,208,218],"same":[115,149],"time.":[116],"MOTSC":[117,137],"full":[120],"set":[126],"while":[127],"minimizing":[128],"set.":[131,198],"Through":[132],"simulation,":[133],"both":[134],"demonstrated":[138],"much":[140],"faster":[141],"running":[142],"time":[143],"over":[144],"exhaustive":[145],"accuracy.":[150],"When":[151],"applied":[152],"real":[154],"sets,":[157],"our":[158],"not":[160],"only":[161],"identified":[162],"known":[163],"but":[166],"also":[167],"predicted":[168],"novel":[169],"combinations":[171,193],"are":[173,216],"worth":[174],"further":[175],"testing.":[176],"In":[177],"addition,":[178],"web-based":[182],"tool":[183,201],"allow":[185],"users":[186],"iteratively":[188],"given":[194],"user-defined":[196],"AVAILABILITY:":[199],"Our":[200],"freely":[203],"available":[204,217],"noncommercial":[206],"use":[207],"http://www.drug.liuzlab.org/.":[209],"CONTACT:":[210],"zhandong.liu@bcm.edu":[211],"SUPPLEMENTARY":[212],"INFORMATION:":[213],"Supplementary":[214],"data":[215],"Bioinformatics":[219],"online.":[220]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":35},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
