{"id":"https://openalex.org/W2163354046","doi":"https://doi.org/10.1093/bioinformatics/btu032","title":"<i>jmodeltest</i>.org: selection of nucleotide substitution models on the cloud","display_name":"<i>jmodeltest</i>.org: selection of nucleotide substitution models on the cloud","publication_year":2014,"publication_date":"2014-01-21","ids":{"openalex":"https://openalex.org/W2163354046","doi":"https://doi.org/10.1093/bioinformatics/btu032","mag":"2163354046","pmid":"https://pubmed.ncbi.nlm.nih.gov/24451621"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1310/48922538/bioinformatics_30_9_1310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1310/48922538/bioinformatics_30_9_1310.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087873656","display_name":"Jose Manuel Santorum","orcid":null},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]},{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jose Manuel Santorum","raw_affiliation_strings":["1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain","institution_ids":["https://openalex.org/I6289922","https://openalex.org/I11019714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087352477","display_name":"Diego Darriba","orcid":"https://orcid.org/0000-0001-5482-3932"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]},{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Diego Darriba","raw_affiliation_strings":["1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain","institution_ids":["https://openalex.org/I6289922","https://openalex.org/I11019714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049011209","display_name":"Guillermo L. Taboada","orcid":"https://orcid.org/0000-0002-6281-6641"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]},{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillermo L. Taboada","raw_affiliation_strings":["1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain","institution_ids":["https://openalex.org/I6289922","https://openalex.org/I11019714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042649313","display_name":"David Posada","orcid":"https://orcid.org/0000-0003-1407-3406"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]},{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"David Posada","raw_affiliation_strings":["1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"],"affiliations":[{"raw_affiliation_string":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain","institution_ids":["https://openalex.org/I6289922","https://openalex.org/I11019714"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087873656"],"corresponding_institution_ids":["https://openalex.org/I11019714","https://openalex.org/I6289922"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.8503,"has_fulltext":true,"cited_by_count":104,"citation_normalized_percentile":{"value":0.94378106,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"30","issue":"9","first_page":"1310","last_page":"1311"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8024011850357056},{"id":"https://openalex.org/keywords/substitution","display_name":"Substitution (logic)","score":0.7964631915092468},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6484969854354858},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6266613602638245},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6036146879196167},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.4670352637767792},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.23541569709777832},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13290420174598694},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.0968998372554779}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8024011850357056},{"id":"https://openalex.org/C2778220771","wikidata":"https://www.wikidata.org/wiki/Q1522579","display_name":"Substitution (logic)","level":2,"score":0.7964631915092468},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6484969854354858},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6266613602638245},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6036146879196167},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.4670352637767792},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.23541569709777832},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13290420174598694},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0968998372554779},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1310/48922538/bioinformatics_30_9_1310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24451621","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24451621","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2975786","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3998143","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ruc.udc.es:2183/20936","is_oa":true,"landing_page_url":"http://hdl.handle.net/2183/20936","pdf_url":null,"source":{"id":"https://openalex.org/S4306402204","display_name":"RUC (Universidade Da Coru\u00f1a)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1310/48922538/bioinformatics_30_9_1310.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310598","display_name":"Amazon Web Services","ror":"https://ror.org/04mv4n011"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163354046.pdf","grobid_xml":"https://content.openalex.org/works/W2163354046.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1969042907","https://openalex.org/W2101846955","https://openalex.org/W2103546861","https://openalex.org/W2104891575"],"related_works":["https://openalex.org/W2379444625","https://openalex.org/W2393147081","https://openalex.org/W2575869988","https://openalex.org/W4308647020","https://openalex.org/W2370088286","https://openalex.org/W2385568494","https://openalex.org/W4244478748","https://openalex.org/W4223488648","https://openalex.org/W2038132579","https://openalex.org/W2389015757"],"abstract_inverted_index":{"The":[0],"selection":[1],"of":[2,4,9,13,31,46,49,81,91],"models":[3],"nucleotide":[5],"substitution":[6],"is":[7,29,96],"one":[8,30],"the":[10,32,78,109,114],"major":[11],"steps":[12],"modern":[14],"phylogenetic":[15],"analysis.":[16,115],"Different":[17],"tools":[18],"exist":[19],"to":[20,36,52,55,112],"accomplish":[21],"this":[22],"task,":[23],"among":[24],"which":[25],"jModelTest":[26],"2":[27],"(jMT2)":[28],"most":[33,107],"popular.":[34],"Still,":[35],"deal":[37],"with":[38,42],"large":[39],"DNA":[40],"alignments":[41],"hundreds":[43],"or":[44],"thousands":[45],"loci,":[47],"users":[48],"jMT2":[50,82],"need":[51],"have":[53],"access":[54],"High":[56],"Performance":[57],"Computing":[58],"clusters,":[59],"including":[60],"installation":[61],"and":[62,86,103],"configuration":[63],"capabilities,":[64],"conditions":[65],"not":[66],"always":[67],"met.":[68],"Here":[69],"we":[70],"present":[71],"jmodeltest.org,":[72],"a":[73,88],"novel":[74],"web":[75],"server":[76],"for":[77,87],"transparent":[79],"execution":[80],"across":[83],"different":[84],"platforms":[85],"wide":[89],"range":[90],"users.":[92],"Its":[93],"main":[94],"benefit":[95],"straightforward":[97],"execution,":[98],"avoiding":[99],"any":[100],"configuration/execution":[101],"issues,":[102],"reducing":[104],"significantly":[105],"in":[106],"cases":[108],"time":[110],"required":[111],"complete":[113]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2016-06-24T00:00:00"}