{"id":"https://openalex.org/W2126573942","doi":"https://doi.org/10.1093/bioinformatics/btu007","title":"myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in <i>Drosophila</i> embryos","display_name":"myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in <i>Drosophila</i> embryos","publication_year":2014,"publication_date":"2014-01-09","ids":{"openalex":"https://openalex.org/W2126573942","doi":"https://doi.org/10.1093/bioinformatics/btu007","mag":"2126573942","pmid":"https://pubmed.ncbi.nlm.nih.gov/24413523"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu007","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1319/48923132/bioinformatics_30_9_1319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1319/48923132/bioinformatics_30_9_1319.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103167700","display_name":"Iv\u00e1n Zelocualtecatl Montiel","orcid":"https://orcid.org/0000-0002-2520-7417"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["SA","US"],"is_corresponding":true,"raw_author_name":"Ivan Montiel","raw_affiliation_strings":["1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I4210143601","https://openalex.org/I185163786","https://openalex.org/I136199984","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026048533","display_name":"Charlotte E. Konikoff","orcid":null},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Charlotte Konikoff","raw_affiliation_strings":["1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I4210143601","https://openalex.org/I185163786","https://openalex.org/I136199984","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113674308","display_name":"Bremen Braun","orcid":null},"institutions":[{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Bremen Braun","raw_affiliation_strings":["1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I4210143601","https://openalex.org/I185163786","https://openalex.org/I136199984","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065191303","display_name":"Mary Packard","orcid":null},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Mary Packard","raw_affiliation_strings":["1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I4210143601","https://openalex.org/I185163786","https://openalex.org/I136199984","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5096566860","display_name":"Sian L. Gramates","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Sian L. Gramates","raw_affiliation_strings":["1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I4210143601","https://openalex.org/I185163786","https://openalex.org/I136199984","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103218833","display_name":"Qian Sun","orcid":"https://orcid.org/0000-0002-2098-9878"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Qian Sun","raw_affiliation_strings":["1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I4210143601","https://openalex.org/I185163786","https://openalex.org/I136199984","https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010419481","display_name":"Jieping Ye","orcid":"https://orcid.org/0000-0001-8662-5818"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Jieping Ye","raw_affiliation_strings":["1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I4210143601","https://openalex.org/I185163786","https://openalex.org/I136199984","https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100680948","display_name":"Sudhir Kumar","orcid":"https://orcid.org/0000-0002-9918-8212"},"institutions":[{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Sudhir Kumar","raw_affiliation_strings":["1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"1 Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University (ASU), Tempe, AZ 85287, USA, 2Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA, 3School of Computing, Informatics, and Decision Systems Engineering, ASU, Tempe, AZ 85287, USA, 4School of Life Sciences, ASU, Tempe, AZ 85287, USA and 5Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I4210143601","https://openalex.org/I185163786","https://openalex.org/I136199984","https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5103167700"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I185163786","https://openalex.org/I4210143601","https://openalex.org/I55732556"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07006834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"30","issue":"9","first_page":"1319","last_page":"1321"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.975600004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.7209470868110657},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.6069130301475525},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5798795223236084},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5652361512184143},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5401453375816345},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5306158661842346},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.48855099081993103},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44380050897598267},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4318511486053467},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4283595085144043},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4085606336593628},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27320384979248047},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24799206852912903},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24143698811531067},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.17943868041038513},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.06970292329788208}],"concepts":[{"id":"https://openalex.org/C2780104201","wikidata":"https://www.wikidata.org/wiki/Q130888","display_name":"Drosophila melanogaster","level":3,"score":0.7209470868110657},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.6069130301475525},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5798795223236084},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5652361512184143},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5401453375816345},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5306158661842346},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.48855099081993103},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44380050897598267},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4318511486053467},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4283595085144043},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4085606336593628},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27320384979248047},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24799206852912903},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24143698811531067},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.17943868041038513},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.06970292329788208},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu007","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1319/48923132/bioinformatics_30_9_1319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24413523","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24413523","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3998132","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3998132","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu007","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1319/48923132/bioinformatics_30_9_1319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126573942.pdf","grobid_xml":"https://content.openalex.org/works/W2126573942.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1560277551","https://openalex.org/W1857352599","https://openalex.org/W2003963489","https://openalex.org/W2045085416","https://openalex.org/W2073580040","https://openalex.org/W2103274510","https://openalex.org/W2116015974","https://openalex.org/W2131067007","https://openalex.org/W2144776166","https://openalex.org/W2153191444","https://openalex.org/W2158092584","https://openalex.org/W2163482144"],"related_works":["https://openalex.org/W2587366952","https://openalex.org/W2393920775","https://openalex.org/W2014093629","https://openalex.org/W3216649527","https://openalex.org/W4230768823","https://openalex.org/W4238951837","https://openalex.org/W2332869616","https://openalex.org/W4256012716","https://openalex.org/W2347739517","https://openalex.org/W2385769412"],"abstract_inverted_index":{"Spatial":[0],"patterns":[1,26,69,103],"of":[2,6,67,75,80,101],"gene":[3,54],"expression":[4,55,81],"are":[5,19],"key":[7],"importance":[8],"in":[9,14,56,70],"understanding":[10],"developmental":[11,85],"networks.":[12],"Using":[13],"situ":[15],"hybridization,":[16],"many":[17],"laboratories":[18],"generating":[20],"images":[21,51,71],"to":[22,28,46,98,104],"describe":[23],"these":[24],"spatial":[25,68],"and":[27,49,72,78,84],"test":[29],"biological":[30],"hypotheses.":[31],"To":[32],"facilitate":[33],"such":[34],"analyses,":[35],"we":[36],"have":[37],"developed":[38],"biologist-centric":[39],"software":[40],"(myFX)":[41],"that":[42],"contains":[43],"computational":[44],"methods":[45],"automatically":[47],"process":[48],"analyze":[50],"depicting":[52],"embryonic":[53],"the":[57,91],"fruit":[58],"fly":[59],"Drosophila":[60],"melanogaster.":[61],"It":[62],"facilitates":[63],"creating":[64],"digital":[65],"descriptions":[66],"enables":[73],"measurements":[74],"pattern":[76],"similarity":[77],"visualization":[79],"across":[82],"genes":[83,107],"stages.":[86],"myFX":[87],"interacts":[88],"directly":[89],"with":[90],"online":[92],"FlyExpress":[93],"database,":[94],"which":[95],"allows":[96],"users":[97],"search":[99],"thousands":[100],"existing":[102],"find":[105],"co-expressed":[106],"by":[108],"image":[109],"comparison.":[110]},"counts_by_year":[],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2016-06-24T00:00:00"}