{"id":"https://openalex.org/W2138839185","doi":"https://doi.org/10.1093/bioinformatics/btt770","title":"Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data","display_name":"Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data","publication_year":2014,"publication_date":"2014-01-08","ids":{"openalex":"https://openalex.org/W2138839185","doi":"https://doi.org/10.1093/bioinformatics/btt770","mag":"2138839185","pmid":"https://pubmed.ncbi.nlm.nih.gov/24407226"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt770","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt770","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1329/48922732/bioinformatics_30_9_1329.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1329/48922732/bioinformatics_30_9_1329.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035078802","display_name":"Kieran O\u2019Neill","orcid":"https://orcid.org/0000-0001-7609-5905"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Kieran O\u2019Neill","raw_affiliation_strings":["1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I141945490","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023259879","display_name":"Adrin Jalali","orcid":null},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Adrin Jalali","raw_affiliation_strings":["1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I141945490","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031425035","display_name":"Nima Aghaeepour","orcid":"https://orcid.org/0000-0002-6117-8764"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Nima Aghaeepour","raw_affiliation_strings":["1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I141945490","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025342513","display_name":"Holger H. Hoos","orcid":"https://orcid.org/0000-0003-0629-0099"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Holger Hoos","raw_affiliation_strings":["1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I141945490","https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035285628","display_name":"Ryan R. Brinkman","orcid":"https://orcid.org/0000-0002-9765-2990"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["CA","DE"],"is_corresponding":true,"raw_author_name":"Ryan R. Brinkman","raw_affiliation_strings":["1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada, 2Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z3, Canada, 3Max-Planck-Institut fur Informatik, Saarland University, 66123, Saarbrucken, Germany, 4Departments of Computer Science and 5Departments of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I141945490","https://openalex.org/I91712215"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5035285628"],"corresponding_institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I141945490","https://openalex.org/I91712215"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5594,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.82812343,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"9","first_page":"1329","last_page":"1330"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.9632999897003174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9961114525794983},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.819242000579834},{"id":"https://openalex.org/keywords/flow-cytometry","display_name":"Flow cytometry","score":0.6886088848114014},{"id":"https://openalex.org/keywords/mass-cytometry","display_name":"Mass cytometry","score":0.6710999608039856},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.610630989074707},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5523640513420105},{"id":"https://openalex.org/keywords/cytometry","display_name":"Cytometry","score":0.44404229521751404},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.439414918422699},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.426960825920105},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39552995562553406},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34304079413414},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22764554619789124},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.11206403374671936},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10475197434425354},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0648951530456543}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9961114525794983},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.819242000579834},{"id":"https://openalex.org/C553184892","wikidata":"https://www.wikidata.org/wiki/Q1141429","display_name":"Flow cytometry","level":2,"score":0.6886088848114014},{"id":"https://openalex.org/C2778015335","wikidata":"https://www.wikidata.org/wiki/Q17051163","display_name":"Mass cytometry","level":4,"score":0.6710999608039856},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.610630989074707},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5523640513420105},{"id":"https://openalex.org/C2780339063","wikidata":"https://www.wikidata.org/wiki/Q5201367","display_name":"Cytometry","level":3,"score":0.44404229521751404},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.439414918422699},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.426960825920105},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39552995562553406},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34304079413414},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22764554619789124},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.11206403374671936},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10475197434425354},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0648951530456543},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D015703","descriptor_name":"Antigens, CD","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D015703","descriptor_name":"Antigens, CD","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D015703","descriptor_name":"Antigens, CD","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt770","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt770","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1329/48922732/bioinformatics_30_9_1329.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3998128","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3998128","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmid:24407226","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24407226","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt770","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt770","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/9/1329/48922732/bioinformatics_30_9_1329.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G3596225420","display_name":null,"funder_award_id":"EB008400","funder_id":"https://openalex.org/F4320319965","funder_display_name":"Michael Smith Health Research BC"},{"id":"https://openalex.org/G4793338163","display_name":null,"funder_award_id":"R01 EB008400","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"},{"id":"https://openalex.org/G589725395","display_name":"The Statistical and Computational Analysis of Flow Cytometry Data","funder_award_id":"5r01eb008400-08","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6877527716","display_name":null,"funder_award_id":"EB008400","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"}],"funders":[{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320321386","display_name":"Terry Fox Foundation","ror":"https://ror.org/05vd00053"},{"id":"https://openalex.org/F4320322597","display_name":"Terry Fox Research Institute","ror":"https://ror.org/05vd00053"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138839185.pdf","grobid_xml":"https://content.openalex.org/works/W2138839185.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1567237453","https://openalex.org/W1943661444","https://openalex.org/W1974065972","https://openalex.org/W1986163307","https://openalex.org/W2015671099","https://openalex.org/W2049294437","https://openalex.org/W2059467017","https://openalex.org/W2112493011","https://openalex.org/W2131058166","https://openalex.org/W2158404603","https://openalex.org/W4238281055"],"related_works":["https://openalex.org/W2176701861","https://openalex.org/W4251194061","https://openalex.org/W2758463337","https://openalex.org/W3000152097","https://openalex.org/W2593722891","https://openalex.org/W2538538514","https://openalex.org/W2886484539","https://openalex.org/W2138839185","https://openalex.org/W2805514482","https://openalex.org/W1976949216"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"We":[2],"present":[3],"a":[4],"significantly":[5],"improved":[6],"version":[7],"of":[8,26,46],"the":[9,37,72],"flowType":[10],"and":[11,21,62,67],"RchyOptimyx":[12,68],"BioConductor-based":[13],"pipeline":[14,38],"that":[15],"is":[16,39],"both":[17],"14":[18],"times":[19],"faster":[20],"can":[22],"accommodate":[23],"multiple":[24],"levels":[25],"biomarker":[27],"expression":[28],"for":[29,49],"up":[30],"to":[31,41],"96":[32],"markers.":[33],"With":[34],"these":[35],"improvements,":[36],"positioned":[40],"be":[42],"an":[43],"integral":[44],"part":[45],"data":[47],"analysis":[48],"high-throughput":[50],"experiments":[51],"on":[52],"high-dimensional":[53],"single-cell":[54,63],"assay":[55],"platforms,":[56],"including":[57],"flow":[58],"cytometry,":[59],"mass":[60],"cytometry":[61],"RT-qPCR.":[64],"Availability:":[65],"FlowType":[66],"are":[69],"distributed":[70],"under":[71],"Artistic":[73],"2.0":[74],"license":[75],"through":[76],"Bioconductor.":[77],"Contact:":[78],"rbrinkman@bccrc.ca":[79]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2016-06-24T00:00:00"}