{"id":"https://openalex.org/W2146317031","doi":"https://doi.org/10.1093/bioinformatics/btt768","title":"Inference with viral quasispecies diversity indices: clonal and NGS approaches","display_name":"Inference with viral quasispecies diversity indices: clonal and NGS approaches","publication_year":2014,"publication_date":"2014-01-02","ids":{"openalex":"https://openalex.org/W2146317031","doi":"https://doi.org/10.1093/bioinformatics/btt768","mag":"2146317031","pmid":"https://pubmed.ncbi.nlm.nih.gov/24389655"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt768","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt768","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087236325","display_name":"Josep Gregori","orcid":"https://orcid.org/0000-0002-4253-8015"},"institutions":[{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Josep Gregori","raw_affiliation_strings":["1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I2801357902","https://openalex.org/I4210132431","https://openalex.org/I123044942","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081149067","display_name":"Miquel Salicr\u00fa","orcid":"https://orcid.org/0000-0001-9644-5626"},"institutions":[{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miquel Salicr\u00fa","raw_affiliation_strings":["1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I2801357902","https://openalex.org/I4210132431","https://openalex.org/I123044942","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010609839","display_name":"Esteban Domingo","orcid":"https://orcid.org/0000-0002-0573-1676"},"institutions":[{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Esteban Domingo","raw_affiliation_strings":["1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I2801357902","https://openalex.org/I4210132431","https://openalex.org/I123044942","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075738659","display_name":"\u00c1lex S\u00e1nchez\u2010Pla","orcid":"https://orcid.org/0000-0002-8673-7737"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alex Sanchez","raw_affiliation_strings":["1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I2801357902","https://openalex.org/I4210132431","https://openalex.org/I123044942","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069448022","display_name":"Juan Ignacio Esteban","orcid":"https://orcid.org/0000-0001-5085-917X"},"institutions":[{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan I. Esteban","raw_affiliation_strings":["1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I2801357902","https://openalex.org/I4210132431","https://openalex.org/I123044942","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058669821","display_name":"Francisco Rodr\u00edguez\u2010Frias","orcid":"https://orcid.org/0000-0002-9128-7013"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco Rodr\u00edguez-Fr\u00edas","raw_affiliation_strings":["1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I2801357902","https://openalex.org/I4210132431","https://openalex.org/I123044942","https://openalex.org/I63634437"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054578489","display_name":"Josep Quer","orcid":"https://orcid.org/0000-0003-0014-084X"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Josep Quer","raw_affiliation_strings":["1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 Liver Unit, Internal Medicine Lab Malalties Hep\u00e0tiques, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035 Barcelona, Spain, 2Roche Diagnostics SL, 08174, Sant Cugat del Vall\u00e8s, Spain, 3Statistics Department, Biology Faculty, Barcelona University, 08028, Barcelona, Spain, 4CIBER de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd) del Instituto de Salud Carlos III, 28029 Madrid, Spain, 5Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus de Cantoblanco, 28049, Madrid, Spain, 6Bioinformatics and Statistics Unit, Vall d\u2019Hebron Institut Recerca (VHIR-HUVH), 08035, Barcelona, Spain, 7Universitat Aut\u00f2noma de Barcelona, 08193 Bellaterra, Barcelona, Spain and 8Biochemistry Unit. Virology Unit/Microbiology Department, HUVH, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I2801357902","https://openalex.org/I4210132431","https://openalex.org/I123044942","https://openalex.org/I63634437"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5087236325"],"corresponding_institution_ids":["https://openalex.org/I123044942","https://openalex.org/I2801357902","https://openalex.org/I4210102407","https://openalex.org/I4210132431","https://openalex.org/I63634437"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.9515,"has_fulltext":false,"cited_by_count":67,"citation_normalized_percentile":{"value":0.96569921,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"30","issue":"8","first_page":"1104","last_page":"1111"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/viral-quasispecies","display_name":"Viral quasispecies","score":0.9557862281799316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5080056190490723},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5030061602592468},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4492800831794739},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4354982376098633},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41318368911743164},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3940684199333191},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29270821809768677},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29023534059524536},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20789626240730286},{"id":"https://openalex.org/keywords/hepatitis-c-virus","display_name":"Hepatitis C virus","score":0.18278679251670837},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.17051160335540771},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09449100494384766}],"concepts":[{"id":"https://openalex.org/C14500911","wikidata":"https://www.wikidata.org/wiki/Q3413375","display_name":"Viral quasispecies","level":4,"score":0.9557862281799316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5080056190490723},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5030061602592468},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4492800831794739},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4354982376098633},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41318368911743164},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3940684199333191},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29270821809768677},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29023534059524536},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20789626240730286},{"id":"https://openalex.org/C2776408679","wikidata":"https://www.wikidata.org/wiki/Q708693","display_name":"Hepatitis C virus","level":3,"score":0.18278679251670837},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.17051160335540771},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09449100494384766},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt768","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt768","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24389655","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24389655","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322850","display_name":"National Academy of Sciences of Ukraine","ror":"https://ror.org/00je4t102"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":78,"referenced_works":["https://openalex.org/W93588716","https://openalex.org/W1968225289","https://openalex.org/W1972260831","https://openalex.org/W1973635629","https://openalex.org/W1974839791","https://openalex.org/W1975553990","https://openalex.org/W1980355960","https://openalex.org/W1993562512","https://openalex.org/W1995875735","https://openalex.org/W2003574450","https://openalex.org/W2010880827","https://openalex.org/W2014444740","https://openalex.org/W2015216410","https://openalex.org/W2022825068","https://openalex.org/W2026721694","https://openalex.org/W2029003567","https://openalex.org/W2029853992","https://openalex.org/W2036711150","https://openalex.org/W2043519223","https://openalex.org/W2046374009","https://openalex.org/W2048260165","https://openalex.org/W2048499136","https://openalex.org/W2048818637","https://openalex.org/W2050783057","https://openalex.org/W2062250105","https://openalex.org/W2068050458","https://openalex.org/W2068310350","https://openalex.org/W2073918065","https://openalex.org/W2075082570","https://openalex.org/W2075557802","https://openalex.org/W2089728879","https://openalex.org/W2097173970","https://openalex.org/W2097528039","https://openalex.org/W2106651885","https://openalex.org/W2107683172","https://openalex.org/W2110501857","https://openalex.org/W2113135059","https://openalex.org/W2114075052","https://openalex.org/W2114870795","https://openalex.org/W2116601594","https://openalex.org/W2119284644","https://openalex.org/W2120474334","https://openalex.org/W2122158190","https://openalex.org/W2123009189","https://openalex.org/W2125963799","https://openalex.org/W2126948011","https://openalex.org/W2130077037","https://openalex.org/W2130924724","https://openalex.org/W2134007392","https://openalex.org/W2135590074","https://openalex.org/W2138240824","https://openalex.org/W2140849404","https://openalex.org/W2143559032","https://openalex.org/W2146209885","https://openalex.org/W2148399664","https://openalex.org/W2148735094","https://openalex.org/W2151265018","https://openalex.org/W2156502917","https://openalex.org/W2157012071","https://openalex.org/W2158028643","https://openalex.org/W2159641034","https://openalex.org/W2160697532","https://openalex.org/W2163314170","https://openalex.org/W2165308292","https://openalex.org/W2166323995","https://openalex.org/W2170200856","https://openalex.org/W2171783890","https://openalex.org/W2181112653","https://openalex.org/W2297100025","https://openalex.org/W2405432308","https://openalex.org/W2510474575","https://openalex.org/W2582743722","https://openalex.org/W2726651211","https://openalex.org/W2914081640","https://openalex.org/W3106047961","https://openalex.org/W6673289328","https://openalex.org/W6674669923","https://openalex.org/W6685465097"],"related_works":["https://openalex.org/W2370565492","https://openalex.org/W2016766059","https://openalex.org/W2029741357","https://openalex.org/W2144907742","https://openalex.org/W1748700469","https://openalex.org/W2620872782","https://openalex.org/W2086431635","https://openalex.org/W2009366069","https://openalex.org/W2073918065","https://openalex.org/W2077505157"],"abstract_inverted_index":{"josep.gregori@gmail.com":[0],"Supplementary":[1,3],"information:":[2],"data":[4],"are":[5],"available":[6],"at":[7],"Bioinformatics":[8],"online.":[9]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
