{"id":"https://openalex.org/W2096136407","doi":"https://doi.org/10.1093/bioinformatics/btt767","title":"Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads","display_name":"Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads","publication_year":2014,"publication_date":"2014-01-02","ids":{"openalex":"https://openalex.org/W2096136407","doi":"https://doi.org/10.1093/bioinformatics/btt767","mag":"2096136407","pmid":"https://pubmed.ncbi.nlm.nih.gov/24389656"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1064/48922669/bioinformatics_30_8_1064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1064/48922669/bioinformatics_30_8_1064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108605263","display_name":"Jan Schr\u00f6der","orcid":"https://orcid.org/0000-0001-5270-0605"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jan Schr\u00f6der","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009999871","display_name":"Arthur Hsu","orcid":"https://orcid.org/0000-0001-8308-1106"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Arthur Hsu","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012923569","display_name":"Samantha E. Boyle","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Samantha E. Boyle","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048069780","display_name":"Geoff Macintyre","orcid":"https://orcid.org/0000-0003-3906-467X"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Geoff Macintyre","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023110316","display_name":"Marek Cmero","orcid":"https://orcid.org/0000-0001-7783-5530"},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Marek Cmero","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082677312","display_name":"Richard W. Tothill","orcid":"https://orcid.org/0000-0003-4522-1184"},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]},{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Richard W. Tothill","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052829828","display_name":"Ricky W. Johnstone","orcid":"https://orcid.org/0000-0001-7053-9237"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ricky W. Johnstone","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058032293","display_name":"Mark Shackleton","orcid":"https://orcid.org/0000-0002-7673-4655"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mark Shackleton","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054939935","display_name":"Anthony T. Papenfuss","orcid":"https://orcid.org/0000-0002-1102-8506"},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I2800555584","display_name":"Peter MacCallum Cancer Centre","ror":"https://ror.org/02a8bt934","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2800555584"]},{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Anthony T. Papenfuss","raw_affiliation_strings":["1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, 2Department of Medical Biology, University of Melbourne, Victoria 3010, 3Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 4Department of Pathology, The University of Melbourne, Victoria 3010, 5NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, 6Department of Computing and Information Systems, University of Melbourne, Victoria 3010, 7Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, 8Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, 9Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and 10Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia","institution_ids":["https://openalex.org/I2800555584","https://openalex.org/I165779595","https://openalex.org/I196021976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5108605263"],"corresponding_institution_ids":["https://openalex.org/I165779595","https://openalex.org/I196021976","https://openalex.org/I2800555584"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.9852,"has_fulltext":true,"cited_by_count":82,"citation_normalized_percentile":{"value":0.94576702,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"30","issue":"8","first_page":"1064","last_page":"1072"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/socrates","display_name":"SOCRATES","score":0.8683252334594727},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5949220061302185},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5634279251098633},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5615682005882263},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.452253133058548},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4516647160053253},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4464230537414551},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4312346875667572},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4050281047821045},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3758006691932678},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.13822564482688904},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1146109402179718}],"concepts":[{"id":"https://openalex.org/C2779259174","wikidata":"https://www.wikidata.org/wiki/Q7553104","display_name":"SOCRATES","level":2,"score":0.8683252334594727},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5949220061302185},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5634279251098633},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5615682005882263},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.452253133058548},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4516647160053253},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4464230537414551},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4312346875667572},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4050281047821045},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3758006691932678},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.13822564482688904},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1146109402179718},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btt767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1064/48922669/bioinformatics_30_8_1064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24389656","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24389656","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/262968","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/262968","pdf_url":"http://hdl.handle.net/11343/262968","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2995981","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3982158","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3982158","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3982158","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1064/48922669/bioinformatics_30_8_1064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G118061582","display_name":null,"funder_award_id":"IRIIS","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G2700803308","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320334707","funder_display_name":"Cancer Council Victoria"},{"id":"https://openalex.org/G4078105352","display_name":null,"funder_award_id":"1003856","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G6489691250","display_name":null,"funder_award_id":"IRIISS","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G7407982985","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8990274812","display_name":null,"funder_award_id":"fellowship","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320307765","display_name":"Pfizer","ror":"https://ror.org/01xdqrp08"},{"id":"https://openalex.org/F4320308296","display_name":"Melanoma Research Alliance","ror":"https://ror.org/025ck6r46"},{"id":"https://openalex.org/F4320313811","display_name":"Veski","ror":null},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320391","display_name":"Pfizer Australia","ror":"https://ror.org/042pnza07"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320334707","display_name":"Cancer Council Victoria","ror":"https://ror.org/023m51b03"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096136407.pdf","grobid_xml":"https://content.openalex.org/works/W2096136407.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1968075576","https://openalex.org/W2029623390","https://openalex.org/W2046601740","https://openalex.org/W2049997041","https://openalex.org/W2065817684","https://openalex.org/W2066254965","https://openalex.org/W2092203068","https://openalex.org/W2093060289","https://openalex.org/W2101342813","https://openalex.org/W2103441770","https://openalex.org/W2107830007","https://openalex.org/W2108698786","https://openalex.org/W2132298698","https://openalex.org/W2139993758","https://openalex.org/W2146005104","https://openalex.org/W2148930557","https://openalex.org/W2150506261","https://openalex.org/W2154397429","https://openalex.org/W2169145121","https://openalex.org/W2170551349"],"related_works":["https://openalex.org/W4248035095","https://openalex.org/W2467949908","https://openalex.org/W3216476714","https://openalex.org/W2377814224","https://openalex.org/W1502106285","https://openalex.org/W610553572","https://openalex.org/W2811421440","https://openalex.org/W2493620576","https://openalex.org/W2360837655","https://openalex.org/W2380556100"],"abstract_inverted_index":{"Socrates":[0],"is":[1],"released":[2],"as":[3],"open":[4],"source":[5],"and":[6],"available":[7,17],"from":[8],"http://bioinf.wehi.edu.au/socrates":[9],"CONTACT:":[10],"papenfuss@wehi.edu.au":[11],"Supplementary":[12,14],"information:":[13],"data":[15],"are":[16],"at":[18],"Bioinformatics":[19],"online.":[20]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
