{"id":"https://openalex.org/W2111024680","doi":"https://doi.org/10.1093/bioinformatics/btt760","title":"Optimization strategies for fast detection of positive selection on phylogenetic trees","display_name":"Optimization strategies for fast detection of positive selection on phylogenetic trees","publication_year":2014,"publication_date":"2014-01-02","ids":{"openalex":"https://openalex.org/W2111024680","doi":"https://doi.org/10.1093/bioinformatics/btt760","mag":"2111024680","pmid":"https://pubmed.ncbi.nlm.nih.gov/24389654"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1129/17141463/btt760.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1129/17141463/btt760.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011903650","display_name":"Mario Valle","orcid":"https://orcid.org/0000-0002-6644-1533"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Mario Valle","raw_affiliation_strings":["1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany"],"affiliations":[{"raw_affiliation_string":"1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056492750","display_name":"Hannes Schabauer","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Hannes Schabauer","raw_affiliation_strings":["1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany"],"affiliations":[{"raw_affiliation_string":"1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053069305","display_name":"Christoph Pacher","orcid":"https://orcid.org/0000-0003-4174-659X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christoph Pacher","raw_affiliation_strings":["1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany"],"affiliations":[{"raw_affiliation_string":"1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069082993","display_name":"Heinz Stockinger","orcid":"https://orcid.org/0000-0003-4666-7719"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Heinz Stockinger","raw_affiliation_strings":["1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany"],"affiliations":[{"raw_affiliation_string":"1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025640090","display_name":"Alexandros Stamatakis","orcid":"https://orcid.org/0000-0003-0353-0691"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Alexandros Stamatakis","raw_affiliation_strings":["1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany"],"affiliations":[{"raw_affiliation_string":"1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054250703","display_name":"Marc Robinson\u2010Rechavi","orcid":"https://orcid.org/0000-0002-3437-3329"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marc Robinson-Rechavi","raw_affiliation_strings":["1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany"],"affiliations":[{"raw_affiliation_string":"1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044471833","display_name":"Nicolas Salamin","orcid":"https://orcid.org/0000-0002-3963-4954"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nicolas Salamin","raw_affiliation_strings":["1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany"],"affiliations":[{"raw_affiliation_string":"1 Swiss National Supercomputing Centre, Scientific Computing Group, Lugano, Switzerland, 2Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland, 3SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 4AIT Austrian Institute of Technology, Safety & Security Department, Vienna, Austria, 5Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland, 6Heidelberg Institute for Theoretical Studies, Scientific Computing Group and 7Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Karlsruhe, Germany","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5011903650"],"corresponding_institution_ids":["https://openalex.org/I12708293"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4242,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.89343426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"30","issue":"8","first_page":"1129","last_page":"1137"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.9327999949455261,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7336440086364746},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7330449819564819},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5220655798912048},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5203830003738403},{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.5188118815422058},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5145460963249207},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5051000714302063},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.4625821113586426},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.414774090051651},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3497001528739929},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17342475056648254},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.15256214141845703},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11800441145896912},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08201518654823303}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7336440086364746},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7330449819564819},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5220655798912048},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5203830003738403},{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.5188118815422058},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5145460963249207},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5051000714302063},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.4625821113586426},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.414774090051651},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3497001528739929},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17342475056648254},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.15256214141845703},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11800441145896912},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08201518654823303},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btt760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1129/17141463/btt760.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24389654","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24389654","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3982156","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3982156","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:iris.unil.ch:iris/234777","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/234777","pdf_url":"https://iris.unil.ch/bitstreams/ec6a6463-dbbb-4e81-a302-895c45ce8227/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:doc.rero.ch:302955","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402253","display_name":"RERO DOC (Universit\u00e4t Bern)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:2995979","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3982156","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:serval.unil.ch:BIB_EE03C80A1584","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_EE03C80A1584","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol. 30, no. 8, pp. 1129-1137","raw_type":"info:eu-repo/semantics/submittedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/8/1129/17141463/btt760.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G160654005","display_name":null,"funder_award_id":"ICT10-067","funder_id":"https://openalex.org/F4320321003","funder_display_name":"Vienna Science and Technology Fund"},{"id":"https://openalex.org/G4023966104","display_name":null,"funder_award_id":"CR32I3","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G420598619","display_name":"Efficient computational solutions for advanced codon models of natural selection","funder_award_id":"143768","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G5897245462","display_name":"Geschichte Ungarns im II. Weltkrieg.","funder_award_id":"43768","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G690500881","display_name":null,"funder_award_id":"CR32I3_143768","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320321003","display_name":"Vienna Science and Technology Fund","ror":"https://ror.org/01f9mc681"},{"id":"https://openalex.org/F4320331322","display_name":"Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45"},{"id":"https://openalex.org/F4320331518","display_name":"Centro Svizzero di Calcolo Scientifico","ror":null},{"id":"https://openalex.org/F4320331617","display_name":"National Supercomputing Centre Singapore","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111024680.pdf","grobid_xml":"https://content.openalex.org/works/W2111024680.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W31923072","https://openalex.org/W420957490","https://openalex.org/W639550976","https://openalex.org/W1522512418","https://openalex.org/W1572074260","https://openalex.org/W1575350781","https://openalex.org/W1978173716","https://openalex.org/W2009082387","https://openalex.org/W2011810501","https://openalex.org/W2052743506","https://openalex.org/W2076079755","https://openalex.org/W2093292082","https://openalex.org/W2097977090","https://openalex.org/W2099704146","https://openalex.org/W2101088466","https://openalex.org/W2102424972","https://openalex.org/W2103116723","https://openalex.org/W2108269201","https://openalex.org/W2109462310","https://openalex.org/W2113926965","https://openalex.org/W2114669670","https://openalex.org/W2118982822","https://openalex.org/W2122029391","https://openalex.org/W2132356750","https://openalex.org/W2141848847","https://openalex.org/W2144029912","https://openalex.org/W2147307434","https://openalex.org/W2148061530","https://openalex.org/W2154770881","https://openalex.org/W2165140440","https://openalex.org/W2168548796","https://openalex.org/W2170565120","https://openalex.org/W2240405888","https://openalex.org/W2337564029","https://openalex.org/W2402402137","https://openalex.org/W2478718281","https://openalex.org/W2798909945","https://openalex.org/W2946724226","https://openalex.org/W4210747366","https://openalex.org/W4230094279","https://openalex.org/W4230357098","https://openalex.org/W4312258136","https://openalex.org/W6653389559","https://openalex.org/W6675431333","https://openalex.org/W6676223052","https://openalex.org/W6713382682","https://openalex.org/W6721618830"],"related_works":["https://openalex.org/W2349516242","https://openalex.org/W2378353542","https://openalex.org/W2358003099","https://openalex.org/W2373243130","https://openalex.org/W2479761186","https://openalex.org/W3088189910","https://openalex.org/W2389928460","https://openalex.org/W2351853150","https://openalex.org/W2386192326","https://openalex.org/W2388734136"],"abstract_inverted_index":{"ftp://ftp.vital-it.ch/tools/FastCodeML/":[0],"CONTACT:":[1],"selectome@unil.ch":[2],"or":[3],"nicolas.salamin@unil.ch.":[4]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}