{"id":"https://openalex.org/W2157827886","doi":"https://doi.org/10.1093/bioinformatics/btt743","title":"PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data","display_name":"PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data","publication_year":2014,"publication_date":"2014-01-11","ids":{"openalex":"https://openalex.org/W2157827886","doi":"https://doi.org/10.1093/bioinformatics/btt743","mag":"2157827886","pmid":"https://pubmed.ncbi.nlm.nih.gov/24413675"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt743","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt743","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046915342","display_name":"Burcu Bak\u0131r-G\u00fcng\u00f6r","orcid":"https://orcid.org/0000-0002-2272-6270"},"institutions":[{"id":"https://openalex.org/I128277893","display_name":"Bah\u00e7e\u015fehir University","ror":"https://ror.org/00yze4d93","country_code":"TR","type":"education","lineage":["https://openalex.org/I128277893"]},{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]},{"id":"https://openalex.org/I134235054","display_name":"Sabanc\u0131 \u00dcniversitesi","ror":"https://ror.org/049asqa32","country_code":"TR","type":"education","lineage":["https://openalex.org/I134235054"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Burcu Bakir-Gungor","raw_affiliation_strings":["1 Department of Genetics and Bioinformatics, Faculty of Arts and Sciences, Bahcesehir University, 34353, Besiktas, Istanbul, Turkey, 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039, Kayseri, Turkey, 3Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey and 4Department of Biological Sciences and Bioengineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey"],"affiliations":[{"raw_affiliation_string":"1 Department of Genetics and Bioinformatics, Faculty of Arts and Sciences, Bahcesehir University, 34353, Besiktas, Istanbul, Turkey, 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039, Kayseri, Turkey, 3Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey and 4Department of Biological Sciences and Bioengineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey","institution_ids":["https://openalex.org/I128277893","https://openalex.org/I95293974","https://openalex.org/I134235054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085059181","display_name":"Ece Egemen","orcid":null},"institutions":[{"id":"https://openalex.org/I128277893","display_name":"Bah\u00e7e\u015fehir University","ror":"https://ror.org/00yze4d93","country_code":"TR","type":"education","lineage":["https://openalex.org/I128277893"]},{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]},{"id":"https://openalex.org/I134235054","display_name":"Sabanc\u0131 \u00dcniversitesi","ror":"https://ror.org/049asqa32","country_code":"TR","type":"education","lineage":["https://openalex.org/I134235054"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ece Egemen","raw_affiliation_strings":["1 Department of Genetics and Bioinformatics, Faculty of Arts and Sciences, Bahcesehir University, 34353, Besiktas, Istanbul, Turkey, 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039, Kayseri, Turkey, 3Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey and 4Department of Biological Sciences and Bioengineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey"],"affiliations":[{"raw_affiliation_string":"1 Department of Genetics and Bioinformatics, Faculty of Arts and Sciences, Bahcesehir University, 34353, Besiktas, Istanbul, Turkey, 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039, Kayseri, Turkey, 3Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey and 4Department of Biological Sciences and Bioengineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey","institution_ids":["https://openalex.org/I128277893","https://openalex.org/I95293974","https://openalex.org/I134235054"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039717404","display_name":"Osman U\u011fur Sezerman","orcid":"https://orcid.org/0000-0003-0905-6783"},"institutions":[{"id":"https://openalex.org/I134235054","display_name":"Sabanc\u0131 \u00dcniversitesi","ror":"https://ror.org/049asqa32","country_code":"TR","type":"education","lineage":["https://openalex.org/I134235054"]},{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]},{"id":"https://openalex.org/I128277893","display_name":"Bah\u00e7e\u015fehir University","ror":"https://ror.org/00yze4d93","country_code":"TR","type":"education","lineage":["https://openalex.org/I128277893"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Osman Ugur Sezerman","raw_affiliation_strings":["1 Department of Genetics and Bioinformatics, Faculty of Arts and Sciences, Bahcesehir University, 34353, Besiktas, Istanbul, Turkey, 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039, Kayseri, Turkey, 3Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey and 4Department of Biological Sciences and Bioengineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey"],"affiliations":[{"raw_affiliation_string":"1 Department of Genetics and Bioinformatics, Faculty of Arts and Sciences, Bahcesehir University, 34353, Besiktas, Istanbul, Turkey, 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039, Kayseri, Turkey, 3Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey and 4Department of Biological Sciences and Bioengineering, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Tuzla, Istanbul, Turkey","institution_ids":["https://openalex.org/I128277893","https://openalex.org/I95293974","https://openalex.org/I134235054"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5046915342"],"corresponding_institution_ids":["https://openalex.org/I128277893","https://openalex.org/I134235054","https://openalex.org/I95293974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6732,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.84112828,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"30","issue":"9","first_page":"1287","last_page":"1289"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.8870009183883667},{"id":"https://openalex.org/keywords/linkage-disequilibrium","display_name":"Linkage disequilibrium","score":0.6762159466743469},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.6600949168205261},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6501996517181396},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.6271661520004272},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5852972269058228},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5457131862640381},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.514521062374115},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49324744939804077},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.42337051033973694},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3434576392173767},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3410169184207916},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.22731956839561462},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2171393632888794},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20055460929870605},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.10871493816375732}],"concepts":[{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.8870009183883667},{"id":"https://openalex.org/C35605836","wikidata":"https://www.wikidata.org/wiki/Q2064311","display_name":"Linkage disequilibrium","level":5,"score":0.6762159466743469},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.6600949168205261},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6501996517181396},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.6271661520004272},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5852972269058228},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5457131862640381},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.514521062374115},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49324744939804077},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.42337051033973694},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3434576392173767},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3410169184207916},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.22731956839561462},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2171393632888794},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20055460929870605},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.10871493816375732},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt743","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt743","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24413675","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24413675","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1963608935","https://openalex.org/W1971835681","https://openalex.org/W2018722789","https://openalex.org/W2058293922","https://openalex.org/W2091583677","https://openalex.org/W2104376129","https://openalex.org/W2111842731","https://openalex.org/W2151295809","https://openalex.org/W2163924952","https://openalex.org/W2166176795","https://openalex.org/W2169823080","https://openalex.org/W2172135976","https://openalex.org/W2335522563"],"related_works":["https://openalex.org/W2187968078","https://openalex.org/W1971424770","https://openalex.org/W1523912222","https://openalex.org/W2111842731","https://openalex.org/W2066467839","https://openalex.org/W2594299395","https://openalex.org/W2765794416","https://openalex.org/W2170506381","https://openalex.org/W2794350630","https://openalex.org/W2771541573"],"abstract_inverted_index":{"Genome-wide":[0],"association":[1,33,99],"studies":[2],"(GWAS)":[3],"have":[4],"revolutionized":[5],"the":[6,9,24,29,43,46,70,93],"search":[7],"for":[8],"variants":[10],"underlying":[11],"human":[12],"complex":[13,40],"diseases.":[14],"However,":[15],"in":[16,45],"a":[17,21,55],"typical":[18],"GWAS,":[19,103],"only":[20],"minority":[22],"of":[23,32,39,48,72,80],"single-nucleotide":[25],"polymorphisms":[26],"(SNPs)":[27],"with":[28],"strongest":[30],"evidence":[31,91],"is":[34,42],"explained.":[35],"One":[36],"possible":[37],"reason":[38],"diseases":[41],"alterations":[44],"activity":[47],"several":[49],"biological":[50],"pathways.":[51,77,118],"Here":[52],"we":[53,89],"present":[54],"web":[56],"server":[57],"called":[58],"Pathway":[59],"and":[60,115],"Network-Oriented":[61],"GWAS":[62],"Analysis":[63],"to":[64],"devise":[65],"functionally":[66],"important":[67],"pathways":[68],"through":[69,102],"identification":[71],"SNP-targeted":[73],"genes":[74],"within":[75],"these":[76],"The":[78],"strength":[79],"our":[81],"methodology":[82],"stems":[83],"from":[84,92],"its":[85],"multidimensional":[86],"perspective,":[87],"where":[88],"combine":[90],"following":[94],"five":[95],"resources:":[96],"(i)":[97],"genetic":[98],"information":[100],"obtained":[101],"(ii)":[104],"SNP":[105],"functional":[106],"information,":[107],"(iii)":[108],"protein-protein":[109],"interaction":[110],"network,":[111],"(iv)":[112],"linkage":[113],"disequilibrium":[114],"(v)":[116],"biochemical":[117]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
