{"id":"https://openalex.org/W2157312249","doi":"https://doi.org/10.1093/bioinformatics/btt717","title":"A combinatorial approach to graphlet counting","display_name":"A combinatorial approach to graphlet counting","publication_year":2013,"publication_date":"2013-12-13","ids":{"openalex":"https://openalex.org/W2157312249","doi":"https://doi.org/10.1093/bioinformatics/btt717","mag":"2157312249","pmid":"https://pubmed.ncbi.nlm.nih.gov/24336411"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt717","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt717","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085382610","display_name":"Toma\u017e Ho\u010devar","orcid":"https://orcid.org/0000-0002-7998-2638"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Toma\u017e Ho\u010devar","raw_affiliation_strings":["Faculty of Computer and Information Science, University of Ljubljana, SI-1000 Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Science, University of Ljubljana, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024075429","display_name":"Janez Dem\u0161ar","orcid":"https://orcid.org/0000-0002-1256-1687"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Janez Dem\u0161ar","raw_affiliation_strings":["Faculty of Computer and Information Science, University of Ljubljana, SI-1000 Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Science, University of Ljubljana, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I153976015"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":4.8624,"has_fulltext":false,"cited_by_count":217,"citation_normalized_percentile":{"value":0.96155463,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"30","issue":"4","first_page":"559","last_page":"565"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.24869999289512634,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.24869999289512634,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.15929999947547913,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.10350000113248825,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.906446635723114},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6962952017784119},{"id":"https://openalex.org/keywords/orbit","display_name":"Orbit (dynamics)","score":0.5775237083435059},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5533410310745239},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.48436102271080017},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.48422861099243164},{"id":"https://openalex.org/keywords/computational-complexity-theory","display_name":"Computational complexity theory","score":0.44814109802246094},{"id":"https://openalex.org/keywords/counting-problem","display_name":"Counting problem","score":0.43653595447540283},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4254450798034668},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2305455207824707},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.21753552556037903},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13802745938301086}],"concepts":[{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.906446635723114},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6962952017784119},{"id":"https://openalex.org/C196644772","wikidata":"https://www.wikidata.org/wiki/Q3884964","display_name":"Orbit (dynamics)","level":2,"score":0.5775237083435059},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5533410310745239},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.48436102271080017},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.48422861099243164},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.44814109802246094},{"id":"https://openalex.org/C16592021","wikidata":"https://www.wikidata.org/wiki/Q5177154","display_name":"Counting problem","level":2,"score":0.43653595447540283},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4254450798034668},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2305455207824707},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.21753552556037903},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13802745938301086},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt717","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt717","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24336411","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24336411","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W100324934","https://openalex.org/W1849803292","https://openalex.org/W1974219242","https://openalex.org/W2003516452","https://openalex.org/W2046488905","https://openalex.org/W2049966951","https://openalex.org/W2051892208","https://openalex.org/W2056069438","https://openalex.org/W2074533336","https://openalex.org/W2087520172","https://openalex.org/W2092986233","https://openalex.org/W2093529889","https://openalex.org/W2104812688","https://openalex.org/W2112262143","https://openalex.org/W2116645510","https://openalex.org/W2119482228","https://openalex.org/W2120063363","https://openalex.org/W2122909744","https://openalex.org/W2124533460","https://openalex.org/W2130237248","https://openalex.org/W2130687290","https://openalex.org/W2137648512","https://openalex.org/W2141629057","https://openalex.org/W2145149978","https://openalex.org/W2148762636","https://openalex.org/W2149780759","https://openalex.org/W2150875823","https://openalex.org/W2161917555","https://openalex.org/W4293282039","https://openalex.org/W6662388975","https://openalex.org/W6676821791","https://openalex.org/W6677837120","https://openalex.org/W6680315137","https://openalex.org/W6681929352"],"related_works":["https://openalex.org/W108845024","https://openalex.org/W57712237","https://openalex.org/W2578985712","https://openalex.org/W4300125793","https://openalex.org/W2406961474","https://openalex.org/W2143566611","https://openalex.org/W2013740965","https://openalex.org/W2248869909","https://openalex.org/W2153120082","https://openalex.org/W2089783325"],"abstract_inverted_index":{"MOTIVATION:":[0],"Small-induced":[1],"subgraphs":[2],"called":[3],"graphlets":[4,56,76],"are":[5],"emerging":[6],"as":[7,109],"a":[8,50,66,92],"possible":[9],"tool":[10],"for":[11,21,42,54],"exploration":[12],"of":[13,18,23,25,29,40,60,68,73,107],"global":[14],"and":[15,20,45,57],"local":[16],"structure":[17],"networks":[19],"analysis":[22],"roles":[24],"individual":[26],"nodes.":[27,62],"One":[28],"the":[30,37,112],"obstacles":[31],"to":[32,79,84],"their":[33,43],"wider":[34],"use":[35],"is":[36,122],"computational":[38],"complexity":[39,100],"algorithms":[41],"discovery":[44],"counting.":[46],"RESULTS:":[47],"We":[48],"propose":[49],"new":[51],"combinatorial":[52],"method":[53],"counting":[55],"orbit":[58,87],"signatures":[59],"network":[61],"The":[63],"algorithm":[64],"builds":[65],"system":[67],"equations":[69],"that":[70],"connect":[71],"counts":[72,88],"orbits":[74],"from":[75],"with":[77,111],"up":[78],"five":[80],"nodes,":[81],"which":[82],"allows":[83],"compute":[85],"all":[86],"by":[89,104],"enumerating":[90],"just":[91],"single":[93],"one.":[94],"This":[95],"reduces":[96],"its":[97],"practical":[98],"time":[99],"in":[101],"sparse":[102],"graphs":[103],"an":[105],"order":[106],"magnitude":[108],"compared":[110],"existing":[113],"pure":[114],"enumeration-based":[115],"algorithms.":[116],"AVAILABILITY":[117],"AND":[118],"IMPLEMENTATION:":[119],"Source":[120],"code":[121],"available":[123],"freely":[124],"at":[125],"http://www.biolab.si/supp/orca/orca.html.":[126]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":24},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":26},{"year":2018,"cited_by_count":21},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":3}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
