{"id":"https://openalex.org/W2095635573","doi":"https://doi.org/10.1093/bioinformatics/btt686","title":"HomSI: a homozygous stretch identifier from next-generation sequencing data","display_name":"HomSI: a homozygous stretch identifier from next-generation sequencing data","publication_year":2013,"publication_date":"2013-12-03","ids":{"openalex":"https://openalex.org/W2095635573","doi":"https://doi.org/10.1093/bioinformatics/btt686","mag":"2095635573","pmid":"https://pubmed.ncbi.nlm.nih.gov/24307702"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt686","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt686","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027270138","display_name":"Zeliha G\u00f6rmez","orcid":"https://orcid.org/0000-0001-9519-2647"},"institutions":[{"id":"https://openalex.org/I198068145","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77","country_code":"TR","type":"government","lineage":["https://openalex.org/I198068145"]},{"id":"https://openalex.org/I4210141511","display_name":"TUBITAK BILGEM","ror":"https://ror.org/057kvja37","country_code":"TR","type":"government","lineage":["https://openalex.org/I4210141511"]},{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Zeliha G\u00f6rmez","raw_affiliation_strings":["1 Advanced Genomics and Bioinformatics Research Center, The Scientific and Technological Research Council of Turkey (TUBITAK-BILGEM), 41470 Gebze, Kocaeli, Turkey and 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039 Kayseri, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Advanced Genomics and Bioinformatics Research Center, The Scientific and Technological Research Council of Turkey (TUBITAK-BILGEM), 41470 Gebze, Kocaeli, Turkey and 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039 Kayseri, Turkey","institution_ids":["https://openalex.org/I198068145","https://openalex.org/I4210141511","https://openalex.org/I95293974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046915342","display_name":"Burcu Bak\u0131r-G\u00fcng\u00f6r","orcid":"https://orcid.org/0000-0002-2272-6270"},"institutions":[{"id":"https://openalex.org/I198068145","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77","country_code":"TR","type":"government","lineage":["https://openalex.org/I198068145"]},{"id":"https://openalex.org/I4210141511","display_name":"TUBITAK BILGEM","ror":"https://ror.org/057kvja37","country_code":"TR","type":"government","lineage":["https://openalex.org/I4210141511"]},{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Burcu Bakir-Gungor","raw_affiliation_strings":["1 Advanced Genomics and Bioinformatics Research Center, The Scientific and Technological Research Council of Turkey (TUBITAK-BILGEM), 41470 Gebze, Kocaeli, Turkey and 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039 Kayseri, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Advanced Genomics and Bioinformatics Research Center, The Scientific and Technological Research Council of Turkey (TUBITAK-BILGEM), 41470 Gebze, Kocaeli, Turkey and 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039 Kayseri, Turkey","institution_ids":["https://openalex.org/I198068145","https://openalex.org/I4210141511","https://openalex.org/I95293974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031031528","display_name":"Mahmut \u015eamil Sa\u011f\u0131ro\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I198068145","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77","country_code":"TR","type":"government","lineage":["https://openalex.org/I198068145"]},{"id":"https://openalex.org/I4210141511","display_name":"TUBITAK BILGEM","ror":"https://ror.org/057kvja37","country_code":"TR","type":"government","lineage":["https://openalex.org/I4210141511"]},{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Mahmut \u015eamil Sa\u011f\u0131ro\u011flu","raw_affiliation_strings":["1 Advanced Genomics and Bioinformatics Research Center, The Scientific and Technological Research Council of Turkey (TUBITAK-BILGEM), 41470 Gebze, Kocaeli, Turkey and 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039 Kayseri, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Advanced Genomics and Bioinformatics Research Center, The Scientific and Technological Research Council of Turkey (TUBITAK-BILGEM), 41470 Gebze, Kocaeli, Turkey and 2Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Abdullah Gul University, 38039 Kayseri, Turkey","institution_ids":["https://openalex.org/I198068145","https://openalex.org/I4210141511","https://openalex.org/I95293974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5046915342"],"corresponding_institution_ids":["https://openalex.org/I198068145","https://openalex.org/I4210141511","https://openalex.org/I95293974"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":1.9045,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.863284,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"3","first_page":"445","last_page":"447"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.7354000210762024,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.7354000210762024,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12400","display_name":"Neurogenetic and Muscular Disorders Research","score":0.04259999841451645,"subfield":{"id":"https://openalex.org/subfields/2716","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.032600000500679016,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.7892511487007141},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6204136610031128},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4430857002735138},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4156107008457184},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2534213960170746},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20752841234207153},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17228195071220398},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08840349316596985}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.7892511487007141},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6204136610031128},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4430857002735138},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4156107008457184},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2534213960170746},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20752841234207153},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17228195071220398},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08840349316596985}],"mesh":[{"descriptor_ui":"D003241","descriptor_name":"Consanguinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003241","descriptor_name":"Consanguinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003241","descriptor_name":"Consanguinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005808","descriptor_name":"Genes, Recessive","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005808","descriptor_name":"Genes, Recessive","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005808","descriptor_name":"Genes, Recessive","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006720","descriptor_name":"Homozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006720","descriptor_name":"Homozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006720","descriptor_name":"Homozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt686","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt686","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24307702","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24307702","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1965967564","https://openalex.org/W1988276998","https://openalex.org/W2034309036","https://openalex.org/W2074078425","https://openalex.org/W2085328927","https://openalex.org/W2089549631","https://openalex.org/W2089587484","https://openalex.org/W2099580353","https://openalex.org/W2131439687","https://openalex.org/W2132372281","https://openalex.org/W2145623220","https://openalex.org/W2156804335","https://openalex.org/W2167702074"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4378651134","https://openalex.org/W1979633005","https://openalex.org/W2352307597","https://openalex.org/W2163724607","https://openalex.org/W1980092392","https://openalex.org/W2608983118","https://openalex.org/W4318812462","https://openalex.org/W37347591","https://openalex.org/W2118976126"],"abstract_inverted_index":{"UNLABELLED:":[0],"In":[1,122],"consanguineous":[2,50],"families,":[3,51],"as":[4,145],"a":[5,118,128],"result":[6],"of":[7,20,32,38,62,97,104,110,154],"inheriting":[8],"the":[9,16,30,36,60,75,82,87,95,101,108,152],"same":[10],"genomic":[11],"segments":[12],"through":[13],"both":[14],"parents,":[15],"individuals":[17],"have":[18,56,126],"stretches":[19],"their":[21],"genomes":[22],"that":[23,131],"are":[24],"homozygous.":[25],"This":[26],"situation":[27],"leads":[28],"to":[29,73],"prevalence":[31],"recessive":[33,53],"diseases":[34],"among":[35],"members":[37],"these":[39],"families.":[40],"Homozygosity":[41],"mapping":[42],"is":[43,170],"based":[44],"on":[45],"this":[46,63,90,123],"observation,":[47],"and":[48,78,107],"in":[49],"several":[52],"disease":[54,83,92],"genes":[55,88],"been":[57],"discovered":[58],"with":[59,175],"help":[61],"technique.":[64],"The":[65],"researchers":[66],"typically":[67],"use":[68],"single":[69,119,160],"nucleotide":[70,161],"polymorphism":[71,162],"arrays":[72],"determine":[74],"homozygous":[76,105,133,155],"regions":[77,106,134,156],"then":[79],"search":[80],"for":[81,113],"gene":[84],"by":[85,158],"sequencing":[86,99,120],"within":[89],"candidate":[91],"loci.":[93],"Recently,":[94],"advent":[96],"next-generation":[98],"enables":[100],"concurrent":[102],"identification":[103],"detection":[109],"mutations":[111],"relevant":[112],"diagnosis,":[114],"using":[115,135],"data":[116],"from":[117],"experiment.":[121],"respect,":[124],"we":[125],"developed":[127],"novel":[129],"tool":[130],"identifies":[132,151],"deep":[136],"sequence":[137],"data.":[138,164],"Using":[139],"*.vcf":[140],"(variant":[141],"call":[142],"format)":[143],"files":[144],"an":[146,176],"input":[147],"file,":[148],"our":[149],"program":[150],"majority":[153],"found":[157],"microarray":[159],"genotype":[163],"AVAILABILITY":[165],"AND":[166],"IMPLEMENTATION:":[167],"HomSI":[168],"software":[169],"freely":[171],"available":[172],"at":[173],"www.igbam.bilgem.tubitak.gov.tr/softwares/HomSI,":[174],"online":[177],"manual.":[178]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
