{"id":"https://openalex.org/W2136895197","doi":"https://doi.org/10.1093/bioinformatics/btt684","title":"ChAMP: 450k Chip Analysis Methylation Pipeline","display_name":"ChAMP: 450k Chip Analysis Methylation Pipeline","publication_year":2013,"publication_date":"2013-12-12","ids":{"openalex":"https://openalex.org/W2136895197","doi":"https://doi.org/10.1093/bioinformatics/btt684","mag":"2136895197","pmid":"https://pubmed.ncbi.nlm.nih.gov/24336642"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt684","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt684","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109701447","display_name":"Tiffany Morris","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Tiffany J. Morris","raw_affiliation_strings":["1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030821765","display_name":"Lee M Butcher","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lee M. Butcher","raw_affiliation_strings":["1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055292391","display_name":"Andrew Feber","orcid":"https://orcid.org/0000-0001-5282-0498"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Feber","raw_affiliation_strings":["1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041076064","display_name":"Andrew E. Teschendorff","orcid":"https://orcid.org/0000-0001-7410-6527"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew E. Teschendorff","raw_affiliation_strings":["1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036273634","display_name":"Ankur Chakravarthy","orcid":"https://orcid.org/0000-0002-2434-6781"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ankur R. Chakravarthy","raw_affiliation_strings":["1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037209844","display_name":"Tomasz K. Wojdacz","orcid":"https://orcid.org/0000-0001-6003-2432"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tomasz K. Wojdacz","raw_affiliation_strings":["1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017588786","display_name":"Stephan Beck","orcid":"https://orcid.org/0000-0001-5290-2151"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephan Beck","raw_affiliation_strings":["1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Medical Genomics, and 2Statistical Genomics, UCL Cancer Institute, University College London, London WC1E 6BT, UK, 3CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai 200031, China and 4Institute of Environmental Medicine, Karolinska Instytutet, 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5109701447"],"corresponding_institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I45129253"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":15.8054,"has_fulltext":false,"cited_by_count":1151,"citation_normalized_percentile":{"value":0.99501078,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"30","issue":"3","first_page":"428","last_page":"430"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11928","display_name":"Genetic Syndromes and Imprinting","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9631346464157104},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7400422692298889},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.636663556098938},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.6109488606452942},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5766523480415344},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4600808918476105},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4085281491279602},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3061472773551941},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18549969792366028},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15723907947540283},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10216167569160461}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9631346464157104},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7400422692298889},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.636663556098938},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.6109488606452942},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5766523480415344},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4600808918476105},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4085281491279602},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3061472773551941},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18549969792366028},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15723907947540283},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10216167569160461},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btt684","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt684","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24336642","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24336642","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3280231","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3904520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1417344","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1417344/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BIOINFORMATICS , 30 (3) pp. 428-430. (2014)","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6164732379","display_name":"Genetics of the MHC and LRC.","funder_award_id":"084071","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320337367","display_name":"Division of Materials Research","ror":"https://ror.org/01pc7k308"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1533335653","https://openalex.org/W1546952499","https://openalex.org/W1963590871","https://openalex.org/W1987180785","https://openalex.org/W2017502278","https://openalex.org/W2029033394","https://openalex.org/W2033102369","https://openalex.org/W2050112556","https://openalex.org/W2080591050","https://openalex.org/W2081502106","https://openalex.org/W2096099115","https://openalex.org/W2096791516","https://openalex.org/W2107665951","https://openalex.org/W2113588666","https://openalex.org/W2116401585","https://openalex.org/W2119883345","https://openalex.org/W2127431419","https://openalex.org/W2128130893","https://openalex.org/W2130752875","https://openalex.org/W2141105144","https://openalex.org/W2161922342","https://openalex.org/W2329888282"],"related_works":["https://openalex.org/W2951444558","https://openalex.org/W2914550539","https://openalex.org/W2902329290","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2024490794","https://openalex.org/W2054863651"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1,71],"Illumina":[2],"Infinium":[3],"HumanMethylation450":[4],"BeadChip":[5],"is":[6,63],"a":[7,36,66],"new":[8,47],"platform":[9],"for":[10,17,49],"high-throughput":[11],"DNA":[12],"methylation":[13],"analysis.":[14],"Several":[15],"methods":[16,43,48],"normalization":[18,42],"and":[19,54,73],"processing":[20],"of":[21,38],"these":[22],"data":[23],"have":[24],"been":[25],"published":[26],"recently.":[27],"Here":[28],"we":[29],"present":[30],"an":[31],"integrated":[32],"analysis":[33],"pipeline":[34],"offering":[35],"choice":[37],"the":[39,74],"most":[40],"popular":[41],"while":[44],"also":[45],"introducing":[46],"calling":[50],"differentially":[51],"methylated":[52],"regions":[53],"detecting":[55],"copy":[56],"number":[57],"aberrations.":[58],"AVAILABILITY":[59],"AND":[60],"IMPLEMENTATION:":[61],"ChAMP":[62],"implemented":[64],"as":[65],"Bioconductor":[67],"package":[68,72],"in":[69],"R.":[70],"vignette":[75],"can":[76],"be":[77],"downloaded":[78],"at":[79],"bioconductor.org":[80]},"counts_by_year":[{"year":2026,"cited_by_count":35},{"year":2025,"cited_by_count":87},{"year":2024,"cited_by_count":145},{"year":2023,"cited_by_count":152},{"year":2022,"cited_by_count":123},{"year":2021,"cited_by_count":170},{"year":2020,"cited_by_count":99},{"year":2019,"cited_by_count":95},{"year":2018,"cited_by_count":68},{"year":2017,"cited_by_count":62},{"year":2016,"cited_by_count":55},{"year":2015,"cited_by_count":41},{"year":2014,"cited_by_count":19}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}