{"id":"https://openalex.org/W2113177220","doi":"https://doi.org/10.1093/bioinformatics/btt680","title":"MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program","display_name":"MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program","publication_year":2013,"publication_date":"2013-11-22","ids":{"openalex":"https://openalex.org/W2113177220","doi":"https://doi.org/10.1093/bioinformatics/btt680","mag":"2113177220","pmid":"https://pubmed.ncbi.nlm.nih.gov/24273238"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt680","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/3/439/48915402/bioinformatics_30_3_439.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/3/439/48915402/bioinformatics_30_3_439.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020511272","display_name":"Mohammad Mehdi Ghahremanpour","orcid":"https://orcid.org/0000-0002-1129-6041"},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]},{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]},{"id":"https://openalex.org/I4210146419","display_name":"Institute for Research in Fundamental Sciences","ror":"https://ror.org/04xreqs31","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210146419"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mohammad Mehdi Ghahremanpour","raw_affiliation_strings":["1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China","institution_ids":["https://openalex.org/I1516879","https://openalex.org/I23946033","https://openalex.org/I4210146419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003496440","display_name":"Seyed Shahriar Arab","orcid":"https://orcid.org/0000-0002-2739-1617"},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]},{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]},{"id":"https://openalex.org/I4210146419","display_name":"Institute for Research in Fundamental Sciences","ror":"https://ror.org/04xreqs31","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210146419"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Seyed Shahriar Arab","raw_affiliation_strings":["1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China","institution_ids":["https://openalex.org/I1516879","https://openalex.org/I23946033","https://openalex.org/I4210146419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067718507","display_name":"Saman Biook Aghazadeh","orcid":null},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]},{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]},{"id":"https://openalex.org/I4210146419","display_name":"Institute for Research in Fundamental Sciences","ror":"https://ror.org/04xreqs31","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210146419"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Saman Biook Aghazadeh","raw_affiliation_strings":["1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China","institution_ids":["https://openalex.org/I1516879","https://openalex.org/I23946033","https://openalex.org/I4210146419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100405951","display_name":"Jin Zhang","orcid":"https://orcid.org/0000-0002-2960-2115"},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]},{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]},{"id":"https://openalex.org/I4210146419","display_name":"Institute for Research in Fundamental Sciences","ror":"https://ror.org/04xreqs31","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210146419"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Jin Zhang","raw_affiliation_strings":["1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China","institution_ids":["https://openalex.org/I1516879","https://openalex.org/I23946033","https://openalex.org/I4210146419"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020854808","display_name":"David van der Spoel","orcid":"https://orcid.org/0000-0002-7659-8526"},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]},{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]},{"id":"https://openalex.org/I4210146419","display_name":"Institute for Research in Fundamental Sciences","ror":"https://ror.org/04xreqs31","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210146419"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"David van der Spoel","raw_affiliation_strings":["1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioinformatics, School of Computer Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 2Department of Biophysics, School of Biological Sciences, Tarbiat Modares University, Tehran, Iran, 3School of Mathematics, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran, 4Department of Computer Science, Faculty of Engineering, University of Tehran, Tehran, Iran, 5Department of Cell and Molecular Biology, Uppsala University, SE-75124 Uppsala, Sweden and 6Department of Chemistry, Zhejiang University, Hangzhou 310027, China","institution_ids":["https://openalex.org/I1516879","https://openalex.org/I23946033","https://openalex.org/I4210146419"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5003496440"],"corresponding_institution_ids":["https://openalex.org/I1516879","https://openalex.org/I23946033","https://openalex.org/I4210146419"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":2.199,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.88036635,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"30","issue":"3","first_page":"439","last_page":"441"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12044","display_name":"Advanced Physical and Chemical Molecular Interactions","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.7727839946746826},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.7119230031967163},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.559705376625061},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5323783755302429},{"id":"https://openalex.org/keywords/lipid-bilayer","display_name":"Lipid bilayer","score":0.5243435502052307},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4493664503097534},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4305207133293152},{"id":"https://openalex.org/keywords/biological-membrane","display_name":"Biological membrane","score":0.4204632043838501},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.38726210594177246},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.3791484832763672},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.37533053755760193},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.33265626430511475},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.32336926460266113},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.19552791118621826},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13297027349472046},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11845028400421143}],"concepts":[{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.7727839946746826},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.7119230031967163},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.559705376625061},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5323783755302429},{"id":"https://openalex.org/C39944091","wikidata":"https://www.wikidata.org/wiki/Q423279","display_name":"Lipid bilayer","level":3,"score":0.5243435502052307},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4493664503097534},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4305207133293152},{"id":"https://openalex.org/C125501631","wikidata":"https://www.wikidata.org/wiki/Q1587185","display_name":"Biological membrane","level":3,"score":0.4204632043838501},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.38726210594177246},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.3791484832763672},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.37533053755760193},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.33265626430511475},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.32336926460266113},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.19552791118621826},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13297027349472046},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11845028400421143},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008051","descriptor_name":"Lipid Bilayers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008051","descriptor_name":"Lipid Bilayers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008051","descriptor_name":"Lipid Bilayers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt680","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/3/439/48915402/bioinformatics_30_3_439.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24273238","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24273238","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt680","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/3/439/48915402/bioinformatics_30_3_439.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324984","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113177220.pdf","grobid_xml":"https://content.openalex.org/works/W2113177220.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1879047861","https://openalex.org/W1971456069","https://openalex.org/W1977486075","https://openalex.org/W1981378270","https://openalex.org/W2020064424","https://openalex.org/W2022777594","https://openalex.org/W2026885029","https://openalex.org/W2032226429","https://openalex.org/W2037773086","https://openalex.org/W2058682177","https://openalex.org/W2077684756","https://openalex.org/W2094497870","https://openalex.org/W2127522551","https://openalex.org/W2141888839","https://openalex.org/W2148395120","https://openalex.org/W2160544821","https://openalex.org/W2168269595","https://openalex.org/W2172084755","https://openalex.org/W3209951468","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4200279489","https://openalex.org/W2088034942","https://openalex.org/W2017019871","https://openalex.org/W2153708143","https://openalex.org/W2227162213","https://openalex.org/W2370627827","https://openalex.org/W2084046036","https://openalex.org/W3130440368","https://openalex.org/W12015570","https://openalex.org/W16778406"],"abstract_inverted_index":{"MOTIVATION:":[0],"Molecular":[1],"dynamics":[2],"(MD)":[3],"simulations":[4,24,45],"have":[5],"had":[6],"a":[7,81,85,134,144],"profound":[8],"impact":[9],"on":[10,123],"studies":[11],"of":[12,22,25,32,50,67,96,109],"membrane":[13,33],"proteins":[14],"during":[15],"past":[16],"two":[17],"decades,":[18],"but":[19],"the":[20,30,36,71,106],"accuracy":[21],"MD":[23,44],"membranes":[26,60,92],"is":[27,54,84,143],"limited":[28],"by":[29],"quality":[31],"models":[34,41],"and":[35,74,104,126],"applied":[37],"force":[38,128],"fields.":[39],"Membrane":[40],"used":[42],"in":[43],"mostly":[46],"contain":[47,62],"one":[48,65],"kind":[49,66],"lipid":[51,68,72,91,111],"molecule.":[52,69],"This":[53],"far":[55],"from":[56,149],"reality,":[57],"for":[58,119],"biological":[59],"always":[61],"more":[63,89],"than":[64],"Moreover,":[70],"composition":[73],"their":[75],"distribution":[76],"are":[77],"functionally":[78],"important.":[79],"As":[80],"result,":[82],"there":[83],"necessity":[86],"to":[87],"prepare":[88],"realistic":[90],"containing":[93],"different":[94],"types":[95],"lipids":[97,121],"at":[98],"physiological":[99],"concentrations.":[100],"RESULTS:":[101],"To":[102],"automate":[103],"simplify":[105],"building":[107],"process":[108],"heterogeneous":[110],"bilayers":[112],"as":[113,115,133],"well":[114],"providing":[116],"molecular":[117],"topologies":[118],"included":[120],"based":[122],"both":[124],"united":[125],"all-atom":[127],"fields,":[129],"we":[130],"provided":[131],"MemBuilder":[132,142],"web-based":[135],"graphical":[136],"user":[137],"interface.":[138],"AVAILABILITY":[139],"AND":[140],"IMPLEMENTATION:":[141],"free":[145],"web":[146],"server":[147],"available":[148],"www.membuilder.org.":[150]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
