{"id":"https://openalex.org/W2149931368","doi":"https://doi.org/10.1093/bioinformatics/btt679","title":"jMetalCpp: optimizing molecular docking problems with a C++ metaheuristic framework","display_name":"jMetalCpp: optimizing molecular docking problems with a C++ metaheuristic framework","publication_year":2013,"publication_date":"2013-11-22","ids":{"openalex":"https://openalex.org/W2149931368","doi":"https://doi.org/10.1093/bioinformatics/btt679","mag":"2149931368","pmid":"https://pubmed.ncbi.nlm.nih.gov/24273242"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt679","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt679","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/3/437/17343987/btt679.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/3/437/17343987/btt679.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024216969","display_name":"Esteban L\u00f3pez-Camacho","orcid":"https://orcid.org/0000-0002-5147-3997"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Esteban L\u00f3pez-Camacho","raw_affiliation_strings":["Lenguajes y Ciencias de la Computaci\u00f3n, Universidad de M\u00e1laga, Bulevar Louis Pasteur 35, 29071, M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"Lenguajes y Ciencias de la Computaci\u00f3n, Universidad de M\u00e1laga, Bulevar Louis Pasteur 35, 29071, M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048363807","display_name":"Mar\u00eda Jes\u00fas Garc\u00eda-Godoy","orcid":"https://orcid.org/0000-0003-1976-023X"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Jes\u00fas Garc\u00eda Godoy","raw_affiliation_strings":["Lenguajes y Ciencias de la Computaci\u00f3n, Universidad de M\u00e1laga, Bulevar Louis Pasteur 35, 29071, M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"Lenguajes y Ciencias de la Computaci\u00f3n, Universidad de M\u00e1laga, Bulevar Louis Pasteur 35, 29071, M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084006900","display_name":"Antonio J. Nebro","orcid":"https://orcid.org/0000-0001-5580-0484"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio J. Nebro","raw_affiliation_strings":["Lenguajes y Ciencias de la Computaci\u00f3n, Universidad de M\u00e1laga, Bulevar Louis Pasteur 35, 29071, M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"Lenguajes y Ciencias de la Computaci\u00f3n, Universidad de M\u00e1laga, Bulevar Louis Pasteur 35, 29071, M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009495520","display_name":"Jos\u00e9 F. Aldana\u2010Montes","orcid":"https://orcid.org/0000-0002-2673-9474"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 F. Aldana-Montes","raw_affiliation_strings":["Lenguajes y Ciencias de la Computaci\u00f3n, Universidad de M\u00e1laga, Bulevar Louis Pasteur 35, 29071, M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"Lenguajes y Ciencias de la Computaci\u00f3n, Universidad de M\u00e1laga, Bulevar Louis Pasteur 35, 29071, M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5009495520"],"corresponding_institution_ids":["https://openalex.org/I82767444"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.9003,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.91234388,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"30","issue":"3","first_page":"437","last_page":"438"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12856","display_name":"Transgenic Plants and Applications","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.981002926826477},{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.8425419330596924},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7603640556335449},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6018010973930359},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5222283601760864},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.4764816462993622},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28111469745635986},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13222527503967285},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.12117898464202881},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11214715242385864},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.08480668067932129},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.07227706909179688},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.07223013043403625}],"concepts":[{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.981002926826477},{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.8425419330596924},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7603640556335449},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6018010973930359},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5222283601760864},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.4764816462993622},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28111469745635986},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13222527503967285},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.12117898464202881},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11214715242385864},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.08480668067932129},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.07227706909179688},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.07223013043403625},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt679","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt679","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/3/437/17343987/btt679.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24273242","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24273242","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt679","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt679","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/3/437/17343987/btt679.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149931368.pdf","grobid_xml":"https://content.openalex.org/works/W2149931368.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1595159159","https://openalex.org/W2000825106","https://openalex.org/W2004617458","https://openalex.org/W2019750793","https://openalex.org/W2020084080","https://openalex.org/W2039568841","https://openalex.org/W2073041046","https://openalex.org/W2104017154","https://openalex.org/W2105668062","https://openalex.org/W2126105956","https://openalex.org/W2134967712","https://openalex.org/W2143381319","https://openalex.org/W2152195021","https://openalex.org/W2152630148","https://openalex.org/W2158534713","https://openalex.org/W6675686534","https://openalex.org/W6682642761"],"related_works":["https://openalex.org/W2136513242","https://openalex.org/W2336040088","https://openalex.org/W4385073511","https://openalex.org/W2766845742","https://openalex.org/W2058674645","https://openalex.org/W3113038228","https://openalex.org/W1594539819","https://openalex.org/W3199423294","https://openalex.org/W2007257620","https://openalex.org/W3201227445"],"abstract_inverted_index":{"jMetalCpp":[0],"software":[1],"adapted":[2],"to":[3],"AutoDock":[4],"is":[5],"freely":[6],"available":[7],"as":[8],"a":[9],"C++":[10],"source":[11],"code":[12],"at":[13],"http://khaos.uma.es/AutodockjMetal/.":[14]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":7},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
