{"id":"https://openalex.org/W2158861601","doi":"https://doi.org/10.1093/bioinformatics/btt663","title":"footprintDB: a database of transcription factors with annotated cis elements and binding interfaces","display_name":"footprintDB: a database of transcription factors with annotated cis elements and binding interfaces","publication_year":2013,"publication_date":"2013-11-14","ids":{"openalex":"https://openalex.org/W2158861601","doi":"https://doi.org/10.1093/bioinformatics/btt663","mag":"2158861601","pmid":"https://pubmed.ncbi.nlm.nih.gov/24234003"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt663","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt663","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/2/258/48914812/bioinformatics_30_2_258.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/2/258/48914812/bioinformatics_30_2_258.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010459612","display_name":"\u00c1lvaro Sebasti\u00e1n","orcid":null},"institutions":[{"id":"https://openalex.org/I4210085944","display_name":"Fundacion Agencia Aragonesa para la Investigacion y el Desarrollo","ror":"https://ror.org/007bpwb04","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210085944"]},{"id":"https://openalex.org/I4210143242","display_name":"Estaci\u00f3n Experimental de Aula Dei","ror":"https://ror.org/056a37x91","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210143242"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Alvaro Sebastian","raw_affiliation_strings":["1 Laboratory of Computational Biology, Department of Genetics and Plant Production, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza (http://www.eead.csic.es/compbio) and 2Fundaci\u00f3n ARAID, Paseo Mar\u00eda Agust\u00edn 36, Zaragoza, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Laboratory of Computational Biology, Department of Genetics and Plant Production, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza (http://www.eead.csic.es/compbio) and 2Fundaci\u00f3n ARAID, Paseo Mar\u00eda Agust\u00edn 36, Zaragoza, Spain","institution_ids":["https://openalex.org/I4210085944","https://openalex.org/I4210143242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091306558","display_name":"Bruno Contreras\u2010Moreira","orcid":"https://orcid.org/0000-0002-5462-907X"},"institutions":[{"id":"https://openalex.org/I4210085944","display_name":"Fundacion Agencia Aragonesa para la Investigacion y el Desarrollo","ror":"https://ror.org/007bpwb04","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210085944"]},{"id":"https://openalex.org/I4210143242","display_name":"Estaci\u00f3n Experimental de Aula Dei","ror":"https://ror.org/056a37x91","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210143242"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Bruno Contreras-Moreira","raw_affiliation_strings":["1 Laboratory of Computational Biology, Department of Genetics and Plant Production, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza (http://www.eead.csic.es/compbio) and 2Fundaci\u00f3n ARAID, Paseo Mar\u00eda Agust\u00edn 36, Zaragoza, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Laboratory of Computational Biology, Department of Genetics and Plant Production, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza (http://www.eead.csic.es/compbio) and 2Fundaci\u00f3n ARAID, Paseo Mar\u00eda Agust\u00edn 36, Zaragoza, Spain","institution_ids":["https://openalex.org/I4210085944","https://openalex.org/I4210143242"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010459612","https://openalex.org/A5091306558"],"corresponding_institution_ids":["https://openalex.org/I4210085944","https://openalex.org/I4210143242"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":2.13,"has_fulltext":true,"cited_by_count":88,"citation_normalized_percentile":{"value":0.87678484,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"30","issue":"2","first_page":"258","last_page":"265"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.8011000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.8011000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.07119999825954437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.025200000032782555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.845392644405365},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5869025588035583},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5439146161079407},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5236408710479736},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.49161940813064575},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.49135342240333557},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48765742778778076},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4718834161758423},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4635184705257416},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3560941219329834},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20488575100898743},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.18164736032485962},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13976320624351501},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12154954671859741}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.845392644405365},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5869025588035583},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5439146161079407},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5236408710479736},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.49161940813064575},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.49135342240333557},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48765742778778076},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4718834161758423},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4635184705257416},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3560941219329834},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20488575100898743},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.18164736032485962},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13976320624351501},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12154954671859741},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt663","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt663","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/2/258/48914812/bioinformatics_30_2_258.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24234003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24234003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:digital.csic.es:10261/91869","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/91869","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Art\u00edculo"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt663","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt663","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/2/258/48914812/bioinformatics_30_2_258.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320338366","display_name":"FP7 Food, Agriculture and Fisheries, Biotechnology","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158861601.pdf","grobid_xml":"https://content.openalex.org/works/W2158861601.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1518304108","https://openalex.org/W1723510838","https://openalex.org/W1965267927","https://openalex.org/W1986064101","https://openalex.org/W1989080074","https://openalex.org/W2025241776","https://openalex.org/W2026690931","https://openalex.org/W2040286978","https://openalex.org/W2041877620","https://openalex.org/W2050438321","https://openalex.org/W2055043387","https://openalex.org/W2098412979","https://openalex.org/W2101292724","https://openalex.org/W2109383935","https://openalex.org/W2117069457","https://openalex.org/W2118628540","https://openalex.org/W2119804413","https://openalex.org/W2120900302","https://openalex.org/W2121365413","https://openalex.org/W2125077974","https://openalex.org/W2129795133","https://openalex.org/W2130479394","https://openalex.org/W2135030836","https://openalex.org/W2135621733","https://openalex.org/W2141354959","https://openalex.org/W2141885858","https://openalex.org/W2142570576","https://openalex.org/W2147135057","https://openalex.org/W2149769193","https://openalex.org/W2155877967","https://openalex.org/W2156125289","https://openalex.org/W2156627746","https://openalex.org/W2156762027","https://openalex.org/W2158266834","https://openalex.org/W2161888246","https://openalex.org/W2168249156","https://openalex.org/W4230330309","https://openalex.org/W4248318091","https://openalex.org/W4320301318","https://openalex.org/W6637581210"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W190299232","https://openalex.org/W1521481095","https://openalex.org/W2165604360","https://openalex.org/W2379997263","https://openalex.org/W2367493320","https://openalex.org/W2131580913","https://openalex.org/W3083097828","https://openalex.org/W2125854412"],"abstract_inverted_index":{"MOTIVATION:":[0],"Traditional":[1],"and":[2,43,66,78,150,164,185,216],"high-throughput":[3],"techniques":[4],"for":[5,117],"determining":[6],"transcription":[7],"factor":[8],"(TF)":[9],"binding":[10,41,47,64],"specificities":[11],"are":[12,22,152],"generating":[13],"large":[14],"volumes":[15],"of":[16,18,31,38,49,72,95,114,122,156,174,187],"data":[17,75,166],"uneven":[19],"quality,":[20],"which":[21,177],"scattered":[23],"across":[24],"individual":[25],"databases.":[26],"RESULTS:":[27],"FootprintDB":[28],"integrates":[29],"some":[30],"the":[32,46,50,73,112,148,171,188,201],"most":[33],"comprehensive":[34],"freely":[35],"available":[36,219],"libraries":[37],"curated":[39],"DNA":[40,63,68,115],"sites":[42,65],"systematically":[44],"annotates":[45],"interfaces":[48],"corresponding":[51],"TFs.":[52],"The":[53],"first":[54],"release":[55],"contains":[56],"2422":[57],"unique":[58],"TF":[59,79,123],"sequences,":[60,130,190],"10":[61],"112":[62],"3662":[67],"motifs.":[69],"A":[70,104],"survey":[71],"included":[74],"sources,":[76],"organisms":[77],"families":[80],"was":[81],"performed":[82,168],"together":[83],"with":[84,133,161],"proprietary":[85],"database":[86,134],"TRANSFAC,":[87],"finding":[88],"that":[89,110,125],"footprintDB":[90,175],"has":[91,107],"a":[92,143,196],"similar":[93],"coverage":[94],"multicellular":[96],"organisms,":[97],"while":[98],"also":[99,139],"containing":[100],"bacterial":[101],"regulatory":[102,129],"data.":[103],"search":[105],"engine":[106],"been":[108],"designed":[109],"drives":[111],"prediction":[113],"motifs":[116],"input":[118,128],"TFs,":[119],"or":[120],"conversely":[121],"sequences":[124],"might":[126],"recognize":[127],"by":[131,147],"comparison":[132],"entries.":[135],"Such":[136],"predictions":[137],"can":[138],"be":[140],"extended":[141],"to":[142,169,180],"single":[144],"proteome":[145],"chosen":[146],"user,":[149],"results":[151],"ranked":[153],"in":[154,213],"terms":[155],"interface":[157,198],"similarity.":[158],"Benchmark":[159],"experiments":[160],"bacterial,":[162],"plant":[163],"human":[165],"were":[167,178],"measure":[170],"predictive":[172],"power":[173],"searches,":[176],"able":[179],"correctly":[181],"recover":[182],"10,":[183],"55":[184],"90%":[186],"tested":[189],"respectively.":[191],"Correctly":[192],"predicted":[193],"TFs":[194],"had":[195],"higher":[197],"similarity":[199],"than":[200],"average,":[202],"confirming":[203],"its":[204],"diagnostic":[205],"value.":[206],"AVAILABILITY":[207],"AND":[208],"IMPLEMENTATION:":[209],"Web":[210],"site":[211],"implemented":[212],"PHP,Perl,":[214],"MySQL":[215],"Apache.":[217],"Freely":[218],"from":[220],"http://floresta.eead.csic.es/footprintdb.":[221]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
