{"id":"https://openalex.org/W2104995186","doi":"https://doi.org/10.1093/bioinformatics/btt644","title":"Computing cavities, channels, pores and pockets in proteins from non-spherical ligands models","display_name":"Computing cavities, channels, pores and pockets in proteins from non-spherical ligands models","publication_year":2013,"publication_date":"2013-11-07","ids":{"openalex":"https://openalex.org/W2104995186","doi":"https://doi.org/10.1093/bioinformatics/btt644","mag":"2104995186","pmid":"https://pubmed.ncbi.nlm.nih.gov/24202541"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt644","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt644","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/6/792/48921882/bioinformatics_30_6_792.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/6/792/48921882/bioinformatics_30_6_792.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028257437","display_name":"Lydia Benkaidali","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157169809","display_name":"University of Sciences and Technology Houari Boumediene","ror":"https://ror.org/02kb89c09","country_code":"DZ","type":"education","lineage":["https://openalex.org/I157169809"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I3124969661","display_name":"Universit\u00e9 des Sciences et de la Technologie d'Oran Mohamed Boudiaf","ror":"https://ror.org/02nbj1r55","country_code":"DZ","type":"education","lineage":["https://openalex.org/I3124969661"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["DZ","FR"],"is_corresponding":false,"raw_author_name":"Lydia Benkaidali","raw_affiliation_strings":["1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I157169809","https://openalex.org/I204730241","https://openalex.org/I3124969661","https://openalex.org/I39804081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027704419","display_name":"Fran\u00e7ois Andr\u00e9","orcid":"https://orcid.org/0000-0003-1742-2800"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157169809","display_name":"University of Sciences and Technology Houari Boumediene","ror":"https://ror.org/02kb89c09","country_code":"DZ","type":"education","lineage":["https://openalex.org/I157169809"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I3124969661","display_name":"Universit\u00e9 des Sciences et de la Technologie d'Oran Mohamed Boudiaf","ror":"https://ror.org/02nbj1r55","country_code":"DZ","type":"education","lineage":["https://openalex.org/I3124969661"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["DZ","FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Andr\u00e9","raw_affiliation_strings":["1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I157169809","https://openalex.org/I204730241","https://openalex.org/I3124969661","https://openalex.org/I39804081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048236597","display_name":"Boubekeur Maouche","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157169809","display_name":"University of Sciences and Technology Houari Boumediene","ror":"https://ror.org/02kb89c09","country_code":"DZ","type":"education","lineage":["https://openalex.org/I157169809"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I3124969661","display_name":"Universit\u00e9 des Sciences et de la Technologie d'Oran Mohamed Boudiaf","ror":"https://ror.org/02nbj1r55","country_code":"DZ","type":"education","lineage":["https://openalex.org/I3124969661"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["DZ","FR"],"is_corresponding":false,"raw_author_name":"Boubekeur Maouche","raw_affiliation_strings":["1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I157169809","https://openalex.org/I204730241","https://openalex.org/I3124969661","https://openalex.org/I39804081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110562719","display_name":"Pridi Siregar","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157169809","display_name":"University of Sciences and Technology Houari Boumediene","ror":"https://ror.org/02kb89c09","country_code":"DZ","type":"education","lineage":["https://openalex.org/I157169809"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I3124969661","display_name":"Universit\u00e9 des Sciences et de la Technologie d'Oran Mohamed Boudiaf","ror":"https://ror.org/02nbj1r55","country_code":"DZ","type":"education","lineage":["https://openalex.org/I3124969661"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["DZ","FR"],"is_corresponding":false,"raw_author_name":"Pridi Siregar","raw_affiliation_strings":["1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I157169809","https://openalex.org/I204730241","https://openalex.org/I3124969661","https://openalex.org/I39804081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108417156","display_name":"Mohamed Benyettou","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157169809","display_name":"University of Sciences and Technology Houari Boumediene","ror":"https://ror.org/02kb89c09","country_code":"DZ","type":"education","lineage":["https://openalex.org/I157169809"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I3124969661","display_name":"Universit\u00e9 des Sciences et de la Technologie d'Oran Mohamed Boudiaf","ror":"https://ror.org/02nbj1r55","country_code":"DZ","type":"education","lineage":["https://openalex.org/I3124969661"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["DZ","FR"],"is_corresponding":false,"raw_author_name":"Mohamed Benyettou","raw_affiliation_strings":["1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I157169809","https://openalex.org/I204730241","https://openalex.org/I3124969661","https://openalex.org/I39804081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052443540","display_name":"Fran\u00e7ois Maurel","orcid":"https://orcid.org/0000-0002-4768-1902"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157169809","display_name":"University of Sciences and Technology Houari Boumediene","ror":"https://ror.org/02kb89c09","country_code":"DZ","type":"education","lineage":["https://openalex.org/I157169809"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I3124969661","display_name":"Universit\u00e9 des Sciences et de la Technologie d'Oran Mohamed Boudiaf","ror":"https://ror.org/02nbj1r55","country_code":"DZ","type":"education","lineage":["https://openalex.org/I3124969661"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["DZ","FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Maurel","raw_affiliation_strings":["1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I157169809","https://openalex.org/I204730241","https://openalex.org/I3124969661","https://openalex.org/I39804081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052429302","display_name":"Michel Petitjean","orcid":"https://orcid.org/0000-0002-1745-5402"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157169809","display_name":"University of Sciences and Technology Houari Boumediene","ror":"https://ror.org/02kb89c09","country_code":"DZ","type":"education","lineage":["https://openalex.org/I157169809"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I3124969661","display_name":"Universit\u00e9 des Sciences et de la Technologie d'Oran Mohamed Boudiaf","ror":"https://ror.org/02nbj1r55","country_code":"DZ","type":"education","lineage":["https://openalex.org/I3124969661"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["DZ","FR"],"is_corresponding":true,"raw_author_name":"Michel Petitjean","raw_affiliation_strings":["1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 ITODYS, UMR 7086, CNRS, Universit\u00e9 Denis Diderot, Paris 7, 2Programme Doctoral International, Universit\u00e9 Pierre & Marie Curie, Paris 6, 3CEA/DSV/iBiTec-S/SB2SM, CNRS, UMR 8221, Saclay, France, 4LPCTCI, Universit\u00e9 des Sciences et de la Technologie Houari Boum\u00e9di\u00e8ne, Algiers, Algeria, 5IBC, Integrative BioComputing SARL, Place du Granier, 35135 Rennes-Chantepie, France, 6LAMOSI, Universit\u00e9 des Sciences et de la Technologie d\u2019Oran Mohamed Boudiaf, Oran, Algeria and 7MTi, UMR-S 973, INSERM, University Denis Diderot, Paris 7, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I157169809","https://openalex.org/I204730241","https://openalex.org/I3124969661","https://openalex.org/I39804081"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5052429302"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I157169809","https://openalex.org/I204730241","https://openalex.org/I3124969661","https://openalex.org/I39804081"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.4237,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.91446381,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"30","issue":"6","first_page":"792","last_page":"800"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.4729999899864197,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.4729999899864197,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.2500999867916107,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.1234000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.6216057538986206},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5809246897697449},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5548223853111267},{"id":"https://openalex.org/keywords/void","display_name":"Void (composites)","score":0.5327607989311218},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49395161867141724},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4696820378303528},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45532846450805664},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.42474842071533203},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41578465700149536},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.36370164155960083},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.21933603286743164},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19072222709655762},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1862252652645111},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1368383765220642}],"concepts":[{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.6216057538986206},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5809246897697449},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5548223853111267},{"id":"https://openalex.org/C2779772531","wikidata":"https://www.wikidata.org/wiki/Q19689164","display_name":"Void (composites)","level":2,"score":0.5327607989311218},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49395161867141724},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4696820378303528},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45532846450805664},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.42474842071533203},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41578465700149536},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.36370164155960083},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.21933603286743164},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19072222709655762},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1862252652645111},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1368383765220642},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016062","descriptor_name":"Porosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016062","descriptor_name":"Porosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016062","descriptor_name":"Porosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019363","descriptor_name":"Cytochrome P-450 CYP1A1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019363","descriptor_name":"Cytochrome P-450 CYP1A1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019363","descriptor_name":"Cytochrome P-450 CYP1A1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051544","descriptor_name":"Cytochrome P-450 CYP3A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051544","descriptor_name":"Cytochrome P-450 CYP3A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051544","descriptor_name":"Cytochrome P-450 CYP3A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btt644","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt644","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/6/792/48921882/bioinformatics_30_6_792.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24202541","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24202541","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt644","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt644","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/6/792/48921882/bioinformatics_30_6_792.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5600000023841858,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104995186.pdf"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W7390340","https://openalex.org/W22534439","https://openalex.org/W125516963","https://openalex.org/W177017104","https://openalex.org/W1511364405","https://openalex.org/W1517566065","https://openalex.org/W1836247468","https://openalex.org/W1965608415","https://openalex.org/W1972159725","https://openalex.org/W1974635207","https://openalex.org/W1979414133","https://openalex.org/W1980209352","https://openalex.org/W1983304433","https://openalex.org/W1984563996","https://openalex.org/W1987491348","https://openalex.org/W1987533705","https://openalex.org/W1989072478","https://openalex.org/W1990495809","https://openalex.org/W1999628683","https://openalex.org/W2012370023","https://openalex.org/W2014226560","https://openalex.org/W2016936988","https://openalex.org/W2019951137","https://openalex.org/W2022266599","https://openalex.org/W2024469207","https://openalex.org/W2030841140","https://openalex.org/W2031194866","https://openalex.org/W2032389990","https://openalex.org/W2034542871","https://openalex.org/W2034801091","https://openalex.org/W2039181331","https://openalex.org/W2042422694","https://openalex.org/W2043901383","https://openalex.org/W2047915087","https://openalex.org/W2051182208","https://openalex.org/W2054726377","https://openalex.org/W2058463742","https://openalex.org/W2059536443","https://openalex.org/W2062884696","https://openalex.org/W2064738738","https://openalex.org/W2065367476","https://openalex.org/W2067963143","https://openalex.org/W2069309953","https://openalex.org/W2069518737","https://openalex.org/W2078176948","https://openalex.org/W2078290150","https://openalex.org/W2081702044","https://openalex.org/W2084040958","https://openalex.org/W2089683277","https://openalex.org/W2091563009","https://openalex.org/W2095375069","https://openalex.org/W2097100227","https://openalex.org/W2101532349","https://openalex.org/W2103794058","https://openalex.org/W2105095869","https://openalex.org/W2107723121","https://openalex.org/W2112794559","https://openalex.org/W2115332677","https://openalex.org/W2122692174","https://openalex.org/W2125600555","https://openalex.org/W2127670503","https://openalex.org/W2130009286","https://openalex.org/W2131080603","https://openalex.org/W2134479424","https://openalex.org/W2135412641","https://openalex.org/W2137825366","https://openalex.org/W2140407975","https://openalex.org/W2144714500","https://openalex.org/W2151631165","https://openalex.org/W2161069015","https://openalex.org/W2164088236","https://openalex.org/W2165811356","https://openalex.org/W2166225722","https://openalex.org/W2962732036","https://openalex.org/W3103412232","https://openalex.org/W4206373172","https://openalex.org/W4233375473","https://openalex.org/W6600957598"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1980377213","https://openalex.org/W2952244581","https://openalex.org/W2739417245","https://openalex.org/W3095611878","https://openalex.org/W4255620067","https://openalex.org/W4282825805","https://openalex.org/W4248001293","https://openalex.org/W4247339252"],"abstract_inverted_index":{"MOTIVATION:":[0],"Identifying":[1],"protein":[2,122],"cavities,":[3,61],"channels":[4,62,129],"and":[5,36,63,85,107,148],"pockets":[6],"accessible":[7],"to":[8,14,162,165],"ligands":[9,100],"is":[10,20,68,101,123,138,160],"a":[11,43,48,69,126,195],"major":[12],"step":[13],"predict":[15],"potential":[16],"protein-ligands":[17],"complexes.":[18],"It":[19],"also":[21],"essential":[22],"for":[23,173],"preparation":[24],"of":[25,32,57,71,79,88,99,103,116,120,128,136,143],"protein-ligand":[26],"docking":[27],"experiments":[28],"in":[29,47,151],"the":[30,54,58,72,77,83,86,89,94,104,117,121,132,166],"context":[31],"enzymatic":[33],"activity":[34],"mechanism":[35],"structure-based":[37],"drug":[38],"design.":[39],"RESULTS:":[40],"We":[41,91],"introduce":[42],"new":[44],"method,":[45,75],"implemented":[46],"program":[49],"named":[50],"CCCPP,":[51],"which":[52],"computes":[53],"void":[55,118],"parts":[56,119],"proteins,":[59],"i.e.":[60],"pockets.":[64],"The":[65,114,134,154],"present":[66],"approach":[67],"variant":[70],"alpha":[73],"shapes":[74,110],"with":[76,140],"advantage":[78],"taking":[80],"into":[81],"account":[82],"size":[84],"shape":[87],"ligand.":[90,133],"show":[92],"that":[93,108,158],"widely":[95],"used":[96],"spherical":[97],"model":[98],"most":[102],"time":[105],"inadequate":[106],"cylindrical":[109],"are":[111,192],"more":[112],"realistic.":[113],"analysis":[115],"done":[124],"via":[125],"network":[127],"depending":[130],"on":[131],"performance":[135],"CCCPP":[137,159],"tested":[139],"known":[141],"substrates":[142,179],"cytochromes":[144],"P450":[145,169],"(CYP)":[146],"1A2":[147],"3A4":[149,178],"involved":[150],"xenobiotics":[152],"metabolism.":[153],"test":[155],"results":[156],"indicate":[157],"able":[161],"find":[163],"pathways":[164],"buried":[167],"heminic":[168],"active":[170],"site":[171],"even":[172],"high":[174],"molecular":[175],"weight":[176],"CYP":[177],"such":[180],"as":[181],"two":[182],"ketoconazoles":[183],"together,":[184],"an":[185],"experimentally":[186],"observed":[187],"situation.":[188],"AVAILABILITY:":[189],"Free":[190],"binaries":[191],"available":[193],"through":[194],"software":[196],"repository":[197],"at":[198],"http://petitjeanmichel.free.fr/itoweb.petitjean.freeware.html":[199],"CONTACT:":[200],"michel.petitjean@univ-paris-diderot.fr.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3}],"updated_date":"2026-08-10T07:06:39.071514","created_date":"2025-10-10T00:00:00"}
