{"id":"https://openalex.org/W2112697101","doi":"https://doi.org/10.1093/bioinformatics/btt632","title":"Model-based clustering for RNA-seq data","display_name":"Model-based clustering for RNA-seq data","publication_year":2013,"publication_date":"2013-11-04","ids":{"openalex":"https://openalex.org/W2112697101","doi":"https://doi.org/10.1093/bioinformatics/btt632","mag":"2112697101","pmid":"https://pubmed.ncbi.nlm.nih.gov/24191069"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btt632","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/2/197/17145374/btt632.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/2/197/17145374/btt632.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070566433","display_name":"Yaqing Si","orcid":"https://orcid.org/0000-0001-7622-1908"},"institutions":[{"id":"https://openalex.org/I107851509","display_name":"Chinese Academy of Tropical Agricultural Sciences","ror":"https://ror.org/003qeh975","country_code":"CN","type":"government","lineage":["https://openalex.org/I107851509","https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I204831749","display_name":"Southwestern University of Finance and Economics","ror":"https://ror.org/04ewct822","country_code":"CN","type":"education","lineage":["https://openalex.org/I204831749"]},{"id":"https://openalex.org/I2799511691","display_name":"Donald Danforth Plant Science Center","ror":"https://ror.org/000cyem11","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799511691"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Yaqing Si","raw_affiliation_strings":["1 School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan 611130, China, 2Department of Statistics, Iowa State University, Ames, IA 50011, USA, 3Institute of Tropical Biosciences and Biotechnology (ITBB), Chinese Academy of Tropical Agriculture Sciences (CATAS), Haikou, Hainan 571101, China and 4Enterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, MO 63132, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan 611130, China, 2Department of Statistics, Iowa State University, Ames, IA 50011, USA, 3Institute of Tropical Biosciences and Biotechnology (ITBB), Chinese Academy of Tropical Agriculture Sciences (CATAS), Haikou, Hainan 571101, China and 4Enterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, MO 63132, USA","institution_ids":["https://openalex.org/I107851509","https://openalex.org/I204831749","https://openalex.org/I2799511691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101734163","display_name":"Peng Liu","orcid":"https://orcid.org/0009-0009-2227-2916"},"institutions":[{"id":"https://openalex.org/I107851509","display_name":"Chinese Academy of Tropical Agricultural Sciences","ror":"https://ror.org/003qeh975","country_code":"CN","type":"government","lineage":["https://openalex.org/I107851509","https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I204831749","display_name":"Southwestern University of Finance and Economics","ror":"https://ror.org/04ewct822","country_code":"CN","type":"education","lineage":["https://openalex.org/I204831749"]},{"id":"https://openalex.org/I2799511691","display_name":"Donald Danforth Plant Science Center","ror":"https://ror.org/000cyem11","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799511691"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Peng Liu","raw_affiliation_strings":["1 School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan 611130, China, 2Department of Statistics, Iowa State University, Ames, IA 50011, USA, 3Institute of Tropical Biosciences and Biotechnology (ITBB), Chinese Academy of Tropical Agriculture Sciences (CATAS), Haikou, Hainan 571101, China and 4Enterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, MO 63132, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan 611130, China, 2Department of Statistics, Iowa State University, Ames, IA 50011, USA, 3Institute of Tropical Biosciences and Biotechnology (ITBB), Chinese Academy of Tropical Agriculture Sciences (CATAS), Haikou, Hainan 571101, China and 4Enterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, MO 63132, USA","institution_ids":["https://openalex.org/I107851509","https://openalex.org/I204831749","https://openalex.org/I2799511691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070589231","display_name":"Pinghua Li","orcid":"https://orcid.org/0000-0003-4314-7400"},"institutions":[{"id":"https://openalex.org/I107851509","display_name":"Chinese Academy of Tropical Agricultural Sciences","ror":"https://ror.org/003qeh975","country_code":"CN","type":"government","lineage":["https://openalex.org/I107851509","https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I204831749","display_name":"Southwestern University of Finance and Economics","ror":"https://ror.org/04ewct822","country_code":"CN","type":"education","lineage":["https://openalex.org/I204831749"]},{"id":"https://openalex.org/I2799511691","display_name":"Donald Danforth Plant Science Center","ror":"https://ror.org/000cyem11","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799511691"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Pinghua Li","raw_affiliation_strings":["1 School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan 611130, China, 2Department of Statistics, Iowa State University, Ames, IA 50011, USA, 3Institute of Tropical Biosciences and Biotechnology (ITBB), Chinese Academy of Tropical Agriculture Sciences (CATAS), Haikou, Hainan 571101, China and 4Enterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, MO 63132, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan 611130, China, 2Department of Statistics, Iowa State University, Ames, IA 50011, USA, 3Institute of Tropical Biosciences and Biotechnology (ITBB), Chinese Academy of Tropical Agriculture Sciences (CATAS), Haikou, Hainan 571101, China and 4Enterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, MO 63132, USA","institution_ids":["https://openalex.org/I107851509","https://openalex.org/I204831749","https://openalex.org/I2799511691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064505993","display_name":"Thomas P. Brutnell","orcid":"https://orcid.org/0000-0002-3581-8211"},"institutions":[{"id":"https://openalex.org/I107851509","display_name":"Chinese Academy of Tropical Agricultural Sciences","ror":"https://ror.org/003qeh975","country_code":"CN","type":"government","lineage":["https://openalex.org/I107851509","https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I204831749","display_name":"Southwestern University of Finance and Economics","ror":"https://ror.org/04ewct822","country_code":"CN","type":"education","lineage":["https://openalex.org/I204831749"]},{"id":"https://openalex.org/I2799511691","display_name":"Donald Danforth Plant Science Center","ror":"https://ror.org/000cyem11","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799511691"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Thomas P. Brutnell","raw_affiliation_strings":["1 School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan 611130, China, 2Department of Statistics, Iowa State University, Ames, IA 50011, USA, 3Institute of Tropical Biosciences and Biotechnology (ITBB), Chinese Academy of Tropical Agriculture Sciences (CATAS), Haikou, Hainan 571101, China and 4Enterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, MO 63132, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Statistics, Southwestern University of Finance and Economics, Chengdu, Sichuan 611130, China, 2Department of Statistics, Iowa State University, Ames, IA 50011, USA, 3Institute of Tropical Biosciences and Biotechnology (ITBB), Chinese Academy of Tropical Agriculture Sciences (CATAS), Haikou, Hainan 571101, China and 4Enterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, MO 63132, USA","institution_ids":["https://openalex.org/I107851509","https://openalex.org/I204831749","https://openalex.org/I2799511691"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070566433","https://openalex.org/A5101734163"],"corresponding_institution_ids":["https://openalex.org/I107851509","https://openalex.org/I204831749","https://openalex.org/I2799511691"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":5.635,"has_fulltext":true,"cited_by_count":170,"citation_normalized_percentile":{"value":0.96989566,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"30","issue":"2","first_page":"197","last_page":"205"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6638000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6638000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.1324000060558319,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.05620000138878822,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7671568989753723},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7648568153381348},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6178033947944641},{"id":"https://openalex.org/keywords/initialization","display_name":"Initialization","score":0.5455011129379272},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.5131312012672424},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5100558400154114},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2752609848976135},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12480920553207397}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7671568989753723},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7648568153381348},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6178033947944641},{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.5455011129379272},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.5131312012672424},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5100558400154114},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2752609848976135},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12480920553207397},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btt632","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/2/197/17145374/btt632.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24191069","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24191069","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.233.4772","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.233.4772","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.stat.iastate.edu/preprint/articles/2011-11.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btt632","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btt632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/2/197/17145374/btt632.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1200686424","display_name":"A Systems Approach to the Development and Function of C4 Photosynthesis","funder_award_id":"1127017","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3979803547","display_name":"Comparative Analysis of C3 and C4 Leaf Development in Rice, Sorghum and Maize","funder_award_id":"0701736","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2112697101.pdf","grobid_xml":"https://content.openalex.org/works/W2112697101.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W34039408","https://openalex.org/W1576718874","https://openalex.org/W1699498167","https://openalex.org/W1981509058","https://openalex.org/W2011832962","https://openalex.org/W2020156040","https://openalex.org/W2030764127","https://openalex.org/W2041258613","https://openalex.org/W2059279601","https://openalex.org/W2060705109","https://openalex.org/W2073459066","https://openalex.org/W2077735774","https://openalex.org/W2078005931","https://openalex.org/W2082583687","https://openalex.org/W2087610689","https://openalex.org/W2097117811","https://openalex.org/W2107018762","https://openalex.org/W2114104545","https://openalex.org/W2117128136","https://openalex.org/W2117341849","https://openalex.org/W2118526609","https://openalex.org/W2121211805","https://openalex.org/W2127042504","https://openalex.org/W2135187880","https://openalex.org/W2141164829","https://openalex.org/W2141425631","https://openalex.org/W2146646206","https://openalex.org/W2152239989","https://openalex.org/W2154431984","https://openalex.org/W2156631105","https://openalex.org/W2161877964","https://openalex.org/W2165341979","https://openalex.org/W2998584138","https://openalex.org/W3103302162","https://openalex.org/W3145543370","https://openalex.org/W4247155351","https://openalex.org/W4285719527","https://openalex.org/W6637588882","https://openalex.org/W6668990524"],"related_works":["https://openalex.org/W3176564347","https://openalex.org/W3031039437","https://openalex.org/W3204184292","https://openalex.org/W1985458517","https://openalex.org/W2355833770","https://openalex.org/W3101398262","https://openalex.org/W3095877357","https://openalex.org/W10861731","https://openalex.org/W2008332083","https://openalex.org/W3200375535"],"abstract_inverted_index":{"MOTIVATION:":[0],"RNA-seq":[1,56,73,144],"technology":[2],"has":[3,181],"been":[4,182],"widely":[5],"adopted":[6],"as":[7,124,126,159],"an":[8,52],"attractive":[9],"alternative":[10,156],"to":[11,14,23,99,112,184],"microarray-based":[12],"methods":[13,150,157,166],"study":[15],"global":[16],"gene":[17,45],"expression.":[18],"However,":[19],"robust":[20],"statistical":[21],"tools":[22],"analyze":[24],"these":[25],"complex":[26],"datasets":[27],"are":[28,86,168],"still":[29],"lacking.":[30],"By":[31],"grouping":[32],"genes":[33],"with":[34],"similar":[35],"expression":[36],"profiles":[37],"across":[38],"treatments,":[39],"cluster":[40],"analysis":[41,140],"provides":[42,192],"insight":[43],"into":[44],"functions":[46],"and":[47,49,78,139,163,195],"networks,":[48],"hence":[50],"is":[51,97,196],"important":[53],"technique":[54],"for":[55,72,92],"data":[57],"analysis.":[58],"RESULTS:":[59],"In":[60,88],"this":[61],"manuscript,":[62],"we":[63,105],"derive":[64],"clustering":[65,102,110,153,165],"algorithms":[66,85],"based":[67,94,170],"on":[68,95,171],"appropriate":[69],"probability":[70,172],"models":[71],"data.":[74],"An":[75,177],"expectation-maximization":[76,84],"algorithm":[77,162],"another":[79],"two":[80],"stochastic":[81],"versions":[82],"of":[83,120,128,132,141],"described.":[87],"addition,":[89],"a":[90,107,114,142],"strategy":[91],"initialization":[93],"likelihood":[96],"proposed":[98,149,187],"improve":[100],"the":[101,130,160],"algorithms.":[103,188],"Moreover,":[104],"present":[106],"model-based":[108],"hybrid-hierarchical":[109],"method":[111],"generate":[113],"tree":[115],"structure":[116],"that":[117,147,167],"allows":[118],"visualization":[119],"relationships":[121],"among":[122],"clusters":[123],"well":[125],"flexibility":[127],"choosing":[129],"number":[131],"clusters.":[133],"Results":[134],"from":[135],"both":[136],"simulation":[137],"studies":[138],"maize":[143],"dataset":[145],"show":[146],"our":[148,186],"provide":[151],"better":[152],"results":[154],"than":[155],"such":[158],"K-means":[161],"hierarchical":[164],"not":[169],"models.":[173],"AVAILABILITY":[174],"AND":[175],"IMPLEMENTATION:":[176],"R":[178,190],"package,":[179],"MBCluster.Seq,":[180],"developed":[183],"implement":[185],"This":[189],"package":[191],"fast":[193],"computation":[194],"publicly":[197],"available":[198],"at":[199],"http://www.r-project.org":[200]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":30},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
